RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 MUC3BQ9H195 1237 aa19.85■□□□□ 0.77
PTPRE-201ENST00000254667 METTL5Q9NRN9 209 aaKnown RBP19.85■□□□□ 0.77
PTPRE-201ENST00000254667 POLBP06746 335 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 HARS2P49590 506 aaKnown RBP19.84■□□□□ 0.77
PTPRE-201ENST00000254667 KCNA1Q09470 495 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 UBA3Q8TBC4 463 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 FOPNLQ96NB1 174 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ERP44Q9BS26 406 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 SCAF8Q9UPN6 1271 aaKnown RBP19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ARL2BPQ9Y2Y0 163 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 MCF2P10911 925 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 NEURL4Q96JN8 1562 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 UBE2Q2LH0YL09 131 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 NKRFO15226 690 aaKnown RBP eCLIP19.84■□□□□ 0.77
PTPRE-201ENST00000254667 GRAP2O75791 330 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 HMBSP08397 361 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 VCAM1P19320 739 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 MAP4P27816 1152 aaKnown RBP19.84■□□□□ 0.77
PTPRE-201ENST00000254667 MDH1P40925 334 aaKnown RBP19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ALDH1A3P47895 512 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 FNTAP49354 379 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 KLK7P49862 253 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 GIT2Q14161 759 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 NAPEPLDQ6IQ20 393 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 MFN1Q8IWA4 741 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 AAASQ9NRG9 546 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ARP10275 920 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ATXN7L3BQ96GX2 97 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 DNAJC7Q99615 494 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ZNF518BQ9C0D4 1074 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ISCUQ9H1K1 167 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 CASS4Q9NQ75 786 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 PXMP2Q9NR77 195 aa19.84■□□□□ 0.77
PTPRE-201ENST00000254667 ATXN8OSP0DMR3 200 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 VDRP11473 427 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 USP10Q14694 798 aaKnown RBP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 DDX53Q86TM3 631 aaKnown RBP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 USP33Q8TEY7 942 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 ECT2Q9H8V3 914 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 TRIM10Q9UDY6 481 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 NAGPAQ9UK23 515 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 UPP2O95045 317 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 PON1P27169 355 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 NPTX2P47972 431 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 FAM161BQ96MY7 647 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 CGRRF1Q99675 332 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 PYGLP06737 847 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 STIP1P31948 543 aaKnown RBP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 SYTL3Q4VX76 610 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 CXorf38Q8TB03 319 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 LZICQ8WZA0 190 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 YY1AP1Q9H869 796 aa19.83■□□□□ 0.77
PTPRE-201ENST00000254667 DBR1Q9UK59 544 aaKnown RBP19.83■□□□□ 0.77
PTPRE-201ENST00000254667 NCAM1P13591 858 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 HMOX2P30519 316 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 PPIL6Q8IXY8 311 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 HOXA2O43364 376 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 RAD51CO43502 376 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 TDRD10Q5VZ19 366 aaKnown RBP19.83■□□□□ 0.76
PTPRE-201ENST00000254667 ATP6V0D2Q8N8Y2 350 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 C1orf131Q8NDD1 294 aaKnown RBP19.83■□□□□ 0.76
PTPRE-201ENST00000254667 ING2Q9H160 280 aa19.83■□□□□ 0.76
PTPRE-201ENST00000254667 KPNA6O60684 536 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 MAGEA4P43358 317 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 KDELC2Q7Z4H8 507 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 LINC00523Q86TU6 105 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 C9orf72Q96LT7 481 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 ANLNQ9NQW6 1124 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 RNF103-CHMP3A0A140T963 221 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 DDTLA6NHG4 134 aaPredicted RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 H7C4K7 107 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 STX3Q13277 289 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 ARHGEF7Q14155 803 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 NAA30Q147X3 362 aaPredicted RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 CHSY1Q86X52 802 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 TPCN2Q8NHX9 752 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 TCRBV5S4A2TA0A5A2 114 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 FAM47DPA6NHR8 397 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 H0Y3Z8 333 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 SNRPAP09012 282 aaKnown RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 SETSIPP0DME0 302 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 MAPTP10636 758 aaKnown RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 CXCL9Q07325 125 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 RGS9BPQ6ZS82 235 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 AGXT2Q9BYV1 514 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 KIAA1683Q9H0B3 1180 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 RANBP17Q9H2T7 1088 aaKnown RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 XAB2Q9HCS7 855 aaKnown RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 RALBP11234 206 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 ANO5Q75V66 913 aa19.82■□□□□ 0.76
PTPRE-201ENST00000254667 AGO4Q9HCK5 861 aaKnown RBP19.82■□□□□ 0.76
PTPRE-201ENST00000254667 EPHX2P34913 555 aa19.81■□□□□ 0.76
PTPRE-201ENST00000254667 COILP38432 576 aaPredicted RBP19.81■□□□□ 0.76
PTPRE-201ENST00000254667 TOB1P50616 345 aaPredicted RBP19.81■□□□□ 0.76
PTPRE-201ENST00000254667 ELMO2Q96JJ3 720 aa19.81■□□□□ 0.76
PTPRE-201ENST00000254667 ZSWIM1Q9BR11 485 aa19.81■□□□□ 0.76
PTPRE-201ENST00000254667 PDCD2LQ9BRP1 358 aa19.81■□□□□ 0.76
PTPRE-201ENST00000254667 EIF2AQ9BY44 585 aaKnown RBP19.81■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms