RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 XPO1O14980 1071 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 P4HA2O15460 535 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 EXOC3O60645 756 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TSC22D2O75157 780 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TADA2AO75478 443 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 URODP06132 367 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ABCB4P21439 1286 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HNF1BP35680 557 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ELK3P41970 407 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MYL5Q02045 173 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 POLD3Q15054 466 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 XKR9Q5GH70 373 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HLA-DQA1Q5Y7H0 255 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D9BQ66K14 1250 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 AAGABQ6PD74 315 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IFNLR1Q8IU57 520 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RHOT2Q8IXI1 618 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SCAIQ8N9R8 606 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TESCQ96BS2 214 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PHACTR3Q96KR7 559 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NUDT12Q9BQG2 462 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RACGAP1Q9H0H5 632 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 USP29Q9HBJ7 922 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ARPP21Q9UBL0 812 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF180Q9UJW8 692 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CD109Q6YHK3 1445 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PHF20L1A8MW92 1017 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CASKO14936 926 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 E2F6O75461 281 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GSTT2P0CG29 244 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GSTT2BP0CG30 244 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM49P0CI25 452 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM49CP0CI26 452 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CCND2P30279 289 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IL15P40933 162 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PEX5P50542 639 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 POLR2LP62875 67 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 COG2Q14746 738 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RUNDC3AQ59EK9 446 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FBXO42Q6P3S6 717 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL24Q6TFL4 600 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RGS9BPQ6ZS82 235 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DCLK2Q8N568 766 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MOV10L1Q9BXT6 1211 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MRPL47Q9HD33 250 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NSMCE4AQ9NXX6 385 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZFP69BQ9UJL9 534 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NOX1Q9Y5S8 564 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF521Q96K83 1311 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IQANK1A0A1B0GTG1 560 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 POTECB2RU33 542 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 F8W031 263 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 IMPDH2P12268 514 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KCNA3P22001 575 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KCNA1Q09470 495 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TAF1CQ15572 869 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KCNT1Q5JUK3 1230 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 INTS11Q5TA45 600 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CIAPIN1Q6FI81 312 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 SOCS4Q8WXH5 440 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RNF31Q96EP0 1072 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 INTS7Q9NVH2 962 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 DPP3Q9NY33 737 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TUBA8Q9NY65 449 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PLB1Q6P1J6 1458 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 MYMKA6NI61 221 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 FSCN2O14926 492 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PLD2O14939 933 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ASAP2O43150 1006 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PRPF4O43172 522 aaKnown RBP eCLIP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CABYRO75952 493 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PKN1Q16512 942 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 FAM187BQ17R55 369 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL12Q53G59 568 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 TAF1BQ53T94 588 aaPredicted RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 MICU3Q86XE3 530 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CYP4X1Q8N118 509 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 NXPE3Q969Y0 559 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 PRMT1Q99873 361 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CNPY3Q9BT09 278 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RNPEPQ9H4A4 650 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 RAD18Q9NS91 495 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 BTG4Q9NY30 223 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 APPL1Q9UKG1 709 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 LEMD3Q9Y2U8 911 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 MYPNQ86TC9 1320 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CLRN2A0PK11 232 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CLASP2O75122 1294 aaKnown RBP2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CHRNA1P02708 482 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CD63P08962 238 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 CCDC166P0CW27 439 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 IST1P53990 364 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 NRLP54845 237 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 SGCGQ13326 291 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 EFR3AQ14156 821 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ACOX1Q15067 660 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL26Q53HC5 615 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 ARMC3Q5W041 872 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 LVRNQ6Q4G3 990 aa2.9□□□□□ -1.94
SCN1A-219ENST00000641575 GLB1LQ6UWU2 654 aa2.9□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms