RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MCAMP43121 646 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 DAB2P98082 770 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SPARCL1Q14515 664 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NKX1-1Q15270 411 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 WDR72Q3MJ13 1102 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZBED8Q8IZ13 594 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF555Q8NEP9 628 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 DEPDC7Q96QD5 511 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MAN1A2O60476 641 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 THP07101 528 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 GCLMP48507 274 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CYP24A1Q07973 514 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TCEA2Q15560 299 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 USP39Q53GS9 565 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZNF484Q5JVG2 852 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 EFL1Q7Z2Z2 1120 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 UNC45BQ8IWX7 931 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CCDC197Q8NCU1 140 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 OSBP2Q969R2 916 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SERAC1Q96JX3 654 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 XPO4Q9C0E2 1151 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TMEM51Q9NW97 253 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 LIMA1Q9UHB6 759 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 RUVBL2Q9Y230 463 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PHF20L1A8MW92 1017 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KCNQ3O43525 872 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CABYRO75952 493 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TOMM70O94826 608 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NFICP08651 508 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PMS2P54278 862 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PPARDQ03181 441 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 DHX9Q08211 1270 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TRIP13Q15645 432 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KNOP1Q1ED39 458 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PRR23CQ6ZRP0 262 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZSCAN1Q8NBB4 408 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 DNAJC11Q9NVH1 559 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 STK39Q9UEW8 545 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 RNF17Q9BXT8 1623 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 INPP4BO15327 924 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ESRRAP11474 423 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 FNTAP49354 379 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 OCA2Q04671 838 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ELF2Q15723 593 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 USP50Q70EL3 339 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CD302Q8IX05 232 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 BHMTQ93088 406 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZMYND12Q9H0C1 365 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MIR1-1HGQ9H1L0 117 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SOHLH2Q9NX45 425 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZC3H7BQ9UGR2 993 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PCSK1NQ9UHG2 260 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 CCDC159P0C7I6 412 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 IL10P22301 178 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 RFX3P48380 749 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NDUFA8P51970 172 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SLC16A1P53985 500 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SCRN1Q12765 414 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NFIXQ14938 502 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 PCSK7Q16549 785 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 USP17L6PQ6QN14 398 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MOSPD2Q8NHP6 518 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 UHMK1Q8TAS1 419 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MAGEC3Q8TD91 643 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 BTBD6Q96KE9 485 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 APOL5Q9BWW9 433 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZSWIM6Q9HCJ5 1215 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SAYSD1Q9NPB0 183 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NMRK2Q9NPI5 230 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 TCOF1Q13428 1488 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 SERPINI2O75830 405 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ATP5BP06576 529 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MUTP22033 750 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 LIFRP42702 1097 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ALDH18A1P54886 795 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 POLR2LP62875 67 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NLRP9Q7RTR0 991 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 NECAB2Q7Z6G3 386 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 USP44Q9H0E7 712 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 KRT84Q9NSB2 600 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 IARS2Q9NSE4 1012 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZSWIM5Q9P217 1185 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 ZFATQ9P243 1243 aa6.41□□□□□ -1.38
SCN1A-217ENST00000637988 MRPS17Q9Y2R5 130 aaKnown RBP6.41□□□□□ -1.38
SCN1A-217ENST00000637988 WDR91A4D1P6 747 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 KCNN4O15554 427 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 IGSF3O75054 1194 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 RASSF9O75901 435 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 GPC1P35052 558 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 ZBED6P86452 979 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 NOGQ13253 232 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PTGISQ16647 500 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 SHROOM1Q2M3G4 852 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 HDDC3Q8N4P3 179 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 EAF2Q96CJ1 260 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CLIC6Q96NY7 704 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 CAPS2Q9BXY5 557 aa6.4□□□□□ -1.38
SCN1A-217ENST00000637988 PHACTR1Q9C0D0 580 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms