RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 WDR6Q9NNW5 1121 aaKnown RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 OLFML3Q9NRN5 406 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SPATA6Q9NWH7 488 aaPredicted RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 GMEB2Q9UKD1 530 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 PCDHB8Q9UN66 801 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 SMG5Q9UPR3 1016 aaKnown RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 MTCL1Q9Y4B5 1905 aaKnown RBP12.6□□□□□ -0.39
CLN3-257ENST00000637110 CLUHO75153 1309 aa12.6□□□□□ -0.39
CLN3-257ENST00000637110 VWA8A3KMH1 1905 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 DOCK8Q8NF50 2099 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 FAM189A1O60320 539 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 PPP1R37O75864 691 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 HNRNPA1P09651 372 aaKnown RBP eCLIP12.59□□□□□ -0.39
CLN3-257ENST00000637110 LRPAP1P30533 357 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 AFMP43652 599 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 KRT85P78386 507 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 YWHAHQ04917 246 aaPredicted RBP12.59□□□□□ -0.39
CLN3-257ENST00000637110 E2F4Q16254 413 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 PPM1JQ5JR12 505 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 SPATA1Q5VX52 437 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 ARMCX5Q6P1M9 558 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 GRASPQ7Z6J2 395 aaPredicted RBP12.59□□□□□ -0.39
CLN3-257ENST00000637110 HPS3Q969F9 1004 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 ZNF707Q96C28 371 aaPredicted RBP12.59□□□□□ -0.39
CLN3-257ENST00000637110 PYM1Q9BRP8 204 aaKnown RBP12.59□□□□□ -0.39
CLN3-257ENST00000637110 RHOBTB2Q9BYZ6 727 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 TRIM9Q9C026 710 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 EPC1Q9H2F5 836 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 BLZF1Q9H2G9 400 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 PCIF1Q9H4Z3 704 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 ASB7Q9H672 318 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 CYP4F11Q9HBI6 524 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 SLC2A4RGQ9NR83 387 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 KBTBD4Q9NVX7 518 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 FBXL5Q9UKA1 691 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 RCOR1Q9UKL0 485 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 KCNH3Q9ULD8 1083 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 ATP6V1DQ9Y5K8 247 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 TIMM13Q9Y5L4 95 aaPredicted RBP12.59□□□□□ -0.39
CLN3-257ENST00000637110 STYXL1Q9Y6J8 313 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 PATJQ8NI35 1801 aa12.59□□□□□ -0.39
CLN3-257ENST00000637110 FRMD3A2A2Y4 597 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 GOLGA8IPA6NC78 632 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 GOLGA8JA6NMD2 632 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 TBC1D4O60343 1298 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 N4BP1O75113 896 aaKnown RBP12.58□□□□□ -0.4
CLN3-257ENST00000637110 IL18RAPO95256 599 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 LDHAP00338 332 aaKnown RBP12.58□□□□□ -0.4
CLN3-257ENST00000637110 LRG1P02750 347 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 CPB1P15086 417 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 FSHRP23945 695 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 MAGEA9P43362 315 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 ROR1Q01973 937 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 CSTF1Q05048 431 aaKnown RBP12.58□□□□□ -0.4
CLN3-257ENST00000637110 ZBTB6Q15916 424 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 RESP18Q5W5W9 173 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 MAML2Q8IZL2 1156 aaPredicted RBP12.58□□□□□ -0.4
CLN3-257ENST00000637110 ZNF461Q8TAF7 563 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 STRA6Q9BX79 667 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 FGFBP2Q9BYJ0 223 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 MAGEF1Q9HAY2 307 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 ZSCAN32Q9NX65 697 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 DPP3Q9NY33 737 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.58□□□□□ -0.4
CLN3-257ENST00000637110 DERAQ9Y315 318 aa12.58□□□□□ -0.4
CLN3-257ENST00000637110 R3HCC1Q9Y3T6 440 aaKnown RBP12.58□□□□□ -0.4
CLN3-257ENST00000637110 PDCD11Q14690 1871 aaKnown RBP12.57□□□□□ -0.4
CLN3-257ENST00000637110 ARHGEF37A1IGU5 675 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 PPEF2O14830 753 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 GARTP22102 1010 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 CASP1P29466 404 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 ADSSP30520 456 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 STARD6P59095 220 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 NTHL1P78549 312 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 TFAMQ00059 246 aaKnown RBP12.57□□□□□ -0.4
CLN3-257ENST00000637110 ACAP1Q15027 740 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 UVSSAQ2YD98 709 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 FAM26FQ5R3K3 315 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 C9orf57Q5W0N0 161 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 SLC8B1Q6J4K2 584 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 METTL23Q86XA0 190 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 NETO1Q8TDF5 533 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 CACTINQ8WUQ7 758 aaKnown RBP12.57□□□□□ -0.4
CLN3-257ENST00000637110 C7orf25Q9BPX7 421 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 CBWD1Q9BRT8 395 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 FOXQ1Q9C009 403 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 RBAKQ9NYW8 714 aaPredicted RBP12.57□□□□□ -0.4
CLN3-257ENST00000637110 SERTAD1Q9UHV2 236 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 RAB23Q9ULC3 237 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 PKD1L2Q7Z442 2459 aa12.57□□□□□ -0.4
CLN3-257ENST00000637110 A0A1B0GVL5 298 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 KANSL1LA0AUZ9 987 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 WDR27A2RRH5 827 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 M0QZQ0 153 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 SLC30A4O14863 429 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 EXTL3O43909 919 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 ADRB2P07550 413 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 ODC1P11926 461 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 GLULP15104 373 aa12.56□□□□□ -0.4
CLN3-257ENST00000637110 HOXA9P31269 272 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms