RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 HSPA6P17066 643 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 C1QBPQ07021 282 aaKnown RBP16.63■□□□□ 0.25
CLN3-251ENST00000636853 KIZQ2M2Z5 673 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 CFAP58Q5T655 872 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 PLEKHA7Q6IQ23 1121 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 MREGQ8N565 214 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 SEC14L1Q92503 715 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 RUFY1Q96T51 708 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 MRPL47Q9HD33 250 aaKnown RBP16.63■□□□□ 0.25
CLN3-251ENST00000636853 O00370 1275 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 IGF2BP3O00425 579 aaKnown RBP eCLIP16.63■□□□□ 0.25
CLN3-251ENST00000636853 MMP8P22894 467 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 PTGIRP43119 386 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 ORC1Q13415 861 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 SIX1Q15475 284 aaPredicted RBP16.63■□□□□ 0.25
CLN3-251ENST00000636853 ZNF667Q5HYK9 610 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 JAMLQ86YT9 394 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 IQCKQ8N0W5 287 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.63■□□□□ 0.255e-8■■■■■ 65.3
CLN3-251ENST00000636853 FAM49AQ9H0Q0 323 aaPredicted RBP16.63■□□□□ 0.25
CLN3-251ENST00000636853 RAB17Q9H0T7 212 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 SDCBP2Q9H190 292 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 FLRT1Q9NZU1 646 aa16.63■□□□□ 0.25
CLN3-251ENST00000636853 TLR3O15455 904 aaKnown RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 CHRNA3P32297 505 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 HSPA9P38646 679 aaKnown RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 SLC1A1P43005 524 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 DHX34Q14147 1143 aaKnown RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 ZSCAN26Q16670 478 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 WDTC1Q8N5D0 677 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 SH3GL2Q99962 352 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 ERP44Q9BS26 406 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 USTQ9Y2C2 406 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 KRT14P02533 472 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 LMAN1P49257 510 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 TAS2R40P59535 323 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 RPL7AP62424 266 aaKnown RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 LACTBP83111 547 aaPredicted RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 MORN1Q5T089 497 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 DUPD1Q68J44 220 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 CCDC137Q6PK04 289 aaKnown RBP16.62■□□□□ 0.25
CLN3-251ENST00000636853 ILDR2Q71H61 639 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 GOLGA6L1Q8N7Z2 621 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 FEZF2Q8TBJ5 459 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 SMYD3Q9H7B4 428 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 FAM114A2Q9NRY5 505 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 PARVAQ9NVD7 372 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 SLC5A4Q9NY91 659 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 MTUS1Q9ULD2 1270 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 SCINQ9Y6U3 715 aa16.62■□□□□ 0.25
CLN3-251ENST00000636853 FAM187AA6NFU0 413 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 RPS6KA5O75582 802 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 CD19P15391 556 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 KCNJ1P48048 391 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 MAP2K5Q13163 448 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 TMEM35BQ8NCS4 154 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 CXorf38Q8TB03 319 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 ARL8AQ96BM9 186 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 DDX27Q96GQ7 796 aaKnown RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 HERPUD2Q9BSE4 406 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.61■□□□□ 0.25
CLN3-251ENST00000636853 SNX24Q9Y343 169 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 A0A1B0GUA9 196 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 OPA1O60313 960 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 LSM8O95777 96 aaKnown RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 POLR2BP30876 1174 aaKnown RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 GJC1P36383 396 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 SSR1P43307 286 aaKnown RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 ZNF157P51786 506 aaPredicted RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 CCL14Q16627 93 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 DENND1BQ6P3S1 775 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 ACAP3Q96P50 834 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 BCO2Q9BYV7 579 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 ASB7Q9H672 318 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 CDHR5Q9HBB8 845 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 NMRK2Q9NPI5 230 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 PCYOX1Q9UHG3 505 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 GNEQ9Y223 722 aaKnown RBP16.61■□□□□ 0.25
CLN3-251ENST00000636853 PTPN22Q9Y2R2 807 aa16.61■□□□□ 0.25
CLN3-251ENST00000636853 CITO14578 2027 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 CENPFP49454 3210 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 SMIM10L2AP0DMW4 78 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 SMIM10L2BP0DMW5 78 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 HSD17B3P37058 310 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 COILP38432 576 aaPredicted RBP16.6■□□□□ 0.25
CLN3-251ENST00000636853 RAD23BP54727 409 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 YWHAEP62258 255 aaKnown RBP16.6■□□□□ 0.25
CLN3-251ENST00000636853 TMEM132DQ14C87 1099 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 TAF1CQ15572 869 aaPredicted RBP16.6■□□□□ 0.25
CLN3-251ENST00000636853 UAP1Q16222 522 aaPredicted RBP16.6■□□□□ 0.25
CLN3-251ENST00000636853 CYP1B1Q16678 543 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 CYP4A22Q5TCH4 519 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 OLFML2BQ68BL8 750 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 PPP1R2P3Q6NXS1 205 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 C1orf54Q8WWF1 131 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 TWNKQ96RR1 684 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 ADPGKQ9BRR6 497 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 PLVAPQ9BX97 442 aa16.6■□□□□ 0.25
CLN3-251ENST00000636853 HMGXB4Q9UGU5 601 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms