RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 LYPLA2O95372 231 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 BCKDHBP21953 392 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 CCT2P78371 535 aaKnown RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 MAPK6Q16659 721 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 DCAF4L1Q3SXM0 396 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 TSGA10IPQ3SY00 556 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 NAIF1Q69YI7 327 aaPredicted RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 KRT25Q7Z3Z0 450 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 PIP4P1Q86T03 277 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 RPLP0P6Q8NHW5 317 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 BSNDQ8WZ55 320 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 PIGKQ92643 395 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 PGLYRP2Q96PD5 576 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 TPSD1Q9BZJ3 242 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 CCDC113Q9H0I3 377 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 ATXN3LQ9H3M9 355 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 HPS4Q9NQG7 708 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 GKN1Q9NS71 199 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 TPCN1Q9ULQ1 816 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 NUB1Q9Y5A7 615 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 TNRC6BQ9UPQ9 1833 aaKnown RBP15.95■□□□□ 0.14
CLN3-249ENST00000636685 PTPRDP23468 1912 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 PLXNB3Q9ULL4 1909 aa15.95■□□□□ 0.14
CLN3-249ENST00000636685 CCDC194A0A1B0GVG4 234 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 OR4Q2P0C623 313 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 U2AF2P26368 475 aaKnown RBP eCLIP15.94■□□□□ 0.14
CLN3-249ENST00000636685 DHPSP49366 369 aaPredicted RBP15.94■□□□□ 0.14
CLN3-249ENST00000636685 MCM2P49736 904 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 EPHB3P54753 998 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 FAM193AP78312 1265 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 DMC1Q14565 340 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 PTPAQ15257 358 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 TRIM68Q6AZZ1 485 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 SYT13Q7L8C5 426 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 NEK8Q86SG6 692 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 BEST2Q8NFU1 509 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 HNRNPLLQ8WVV9 542 aaKnown RBP15.94■□□□□ 0.14
CLN3-249ENST00000636685 DDX12PQ92771 950 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 ZMAT2Q96NC0 199 aaKnown RBP15.94■□□□□ 0.14
CLN3-249ENST00000636685 AIFM3Q96NN9 605 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 HSD17B14Q9BPX1 270 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 POLR3CQ9BUI4 534 aaPredicted RBP15.94■□□□□ 0.14
CLN3-249ENST00000636685 C2orf40Q9H1Z8 148 aa15.94■□□□□ 0.14
CLN3-249ENST00000636685 THG1LQ9NWX6 298 aaKnown RBP15.94■□□□□ 0.14
CLN3-249ENST00000636685 H0Y626 953 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 TRIM16O95361 564 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 HMGB1P09429 215 aaKnown RBP15.93■□□□□ 0.14
CLN3-249ENST00000636685 GCFC2P16383 781 aaKnown RBP15.93■□□□□ 0.14
CLN3-249ENST00000636685 GABRR2P28476 465 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 GALK1P51570 392 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 CYP4F8P98187 520 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 DUSP4Q13115 394 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 PLD1Q13393 1074 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 RUNX3Q13761 415 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 KRT32Q14532 448 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 ARHGAP15Q53QZ3 475 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 TRIM61Q5EBN2 209 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 NT5DC1Q5TFE4 455 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 CEP120Q8N960 986 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 LRIG1Q96JA1 1093 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 SUSD3Q96L08 255 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 FAM83CQ9BQN1 747 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 EBF3Q9H4W6 596 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 EVLQ9UI08 416 aaPredicted RBP15.93■□□□□ 0.14
CLN3-249ENST00000636685 DENND4CQ5VZ89 1909 aa15.93■□□□□ 0.14
CLN3-249ENST00000636685 URB1O60287 2271 aaKnown RBP15.93■□□□□ 0.14
CLN3-249ENST00000636685 CYSRT1A8MQ03 144 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 DRD1P21728 446 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 MCM4P33991 863 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 OSTNP61366 133 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 SSRP1Q08945 709 aaKnown RBP15.92■□□□□ 0.14
CLN3-249ENST00000636685 LMAN2Q12907 356 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 SEMA3BQ13214 749 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 USP39Q53GS9 565 aaKnown RBP15.92■□□□□ 0.14
CLN3-249ENST00000636685 XKR4Q5GH76 650 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 ALKAL1Q6UXT8 129 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 RAB44Q7Z6P3 723 aaPredicted RBP15.92■□□□□ 0.14
CLN3-249ENST00000636685 DNAJB7Q7Z6W7 309 aaPredicted RBP15.92■□□□□ 0.14
CLN3-249ENST00000636685 APPL2Q8NEU8 664 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 C18orf25Q96B23 403 aaPredicted RBP15.92■□□□□ 0.14
CLN3-249ENST00000636685 TBC1D32Q96NH3 1257 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 TASP1Q9H6P5 420 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 KCNJ14Q9UNX9 436 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 SLC27A5Q9Y2P5 690 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 SHROOM3Q8TF72 1996 aa15.92■□□□□ 0.14
CLN3-249ENST00000636685 SOAT2O75908 522 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 ARSAP15289 507 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 ENGP17813 658 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 WEE1P30291 646 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 RDXP35241 583 aaKnown RBP15.91■□□□□ 0.14
CLN3-249ENST00000636685 ALDH1A3P47895 512 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 ATF7IP2Q5U623 682 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 GALNT17Q6IS24 598 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 C11orf74Q86VG3 221 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 TRIM22Q8IYM9 498 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 GLIS3Q8NEA6 775 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 EZH1Q92800 747 aaPredicted RBP15.91■□□□□ 0.14
CLN3-249ENST00000636685 KIFC3Q9BVG8 833 aa15.91■□□□□ 0.14
CLN3-249ENST00000636685 NUSAP1Q9BXS6 441 aaKnown RBP15.91■□□□□ 0.14
CLN3-249ENST00000636685 SLC38A7Q9NVC3 462 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms