RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ITIH3Q06033 890 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 C1QBPQ07021 282 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 CKAP4Q07065 602 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 C9orf57Q5W0N0 161 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 ACAD10Q6JQN1 1059 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 TRAF7Q6Q0C0 670 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 DPH6Q7L8W6 267 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 CTU1Q7Z7A3 348 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 UNC93AQ86WB7 457 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 PHF13Q86YI8 300 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 FAM126BQ8IXS8 530 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 CEP112Q8N8E3 955 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 LRRC57Q8N9N7 239 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 ANKLE1Q8NAG6 615 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 MSANTD4Q8NCY6 345 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 PPP1R13LQ8WUF5 828 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 FAM84AQ96KN4 292 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 ZMAT2Q96NC0 199 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 PPP1R10Q96QC0 940 aaKnown RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 RPS6KC1Q96S38 1066 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 PACSIN1Q9BY11 444 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 MCOLN1Q9GZU1 580 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 CRISPLD2Q9H0B8 497 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 UNC93B1Q9H1C4 597 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 RNF216Q9NWF9 866 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 RNF14Q9UBS8 474 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 BARX2Q9UMQ3 279 aaPredicted RBP11.28□□□□□ -0.6
CLN3-248ENST00000636355 AGAP1Q9UPQ3 857 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 HYOU1Q9Y4L1 999 aa11.28□□□□□ -0.6
CLN3-248ENST00000636355 MICAL3Q7RTP6 2002 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 PIRO00625 290 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 THAP12O43422 761 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 MOCS3O95396 460 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 ABL1P00519 1130 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 FTLP02792 175 aaPredicted RBP11.27□□□□□ -0.61
CLN3-248ENST00000636355 GHRP10912 638 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 CCL5P13501 91 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 CD52P31358 61 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 TAF6P49848 677 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 NFX1Q12986 1120 aaKnown RBP11.27□□□□□ -0.61
CLN3-248ENST00000636355 GRIK3Q13003 919 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 CLUL1Q15846 466 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 ZNF618Q5T7W0 954 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 FBXO46Q6PJ61 603 aaPredicted RBP11.27□□□□□ -0.61
CLN3-248ENST00000636355 SCARA5Q6ZMJ2 495 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 MON1BQ7L1V2 547 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 ANKRD33Q7Z3H0 272 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 LIMS2Q7Z4I7 341 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 SLFN11Q7Z7L1 901 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 PALB2Q86YC2 1186 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 GPIHBP1Q8IV16 184 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 TOP6BLQ8N6T0 577 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 MNS1Q8NEH6 495 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 TPCN2Q8NHX9 752 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 SH3TC2Q8TF17 1288 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 APBB2Q92870 758 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 ARMC5Q96C12 935 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 UROC1Q96N76 676 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 MIS12Q9H081 205 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 LHX5Q9H2C1 402 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 NXF1Q9UBU9 619 aaKnown RBP11.27□□□□□ -0.61
CLN3-248ENST00000636355 TUBGCP4Q9UGJ1 667 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 PARP2Q9UGN5 583 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 SNX12Q9UMY4 172 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 HES2Q9Y543 173 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 SAR1BQ9Y6B6 198 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 SCINQ9Y6U3 715 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 DUSP10Q9Y6W6 482 aa11.27□□□□□ -0.61
CLN3-248ENST00000636355 CENPFP49454 3210 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 LTBP2Q14767 1821 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 ARHGEF37A1IGU5 675 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 GRID2IPA4D2P6 1211 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 MIF4GDA9UHW6 222 aaKnown RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 TULP1O00294 542 aaPredicted RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 PTGESO14684 152 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 EOMESO95936 686 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 CALB1P05937 261 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 RPL9P32969 192 aaKnown RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 TAP1Q03518 808 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 LIN9Q5TKA1 542 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 PRPF38BQ5VTL8 546 aaKnown RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 TAF3Q5VWG9 929 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 LRRC8DQ7L1W4 858 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 ZNF572Q7Z3I7 529 aaPredicted RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 TMEM35BQ8NCS4 154 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 ZNF606Q8WXB4 792 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 ZNF653Q96CK0 615 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 DDX27Q96GQ7 796 aaKnown RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 TOX2Q96NM4 488 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 PCDHB18PQ96TA0 734 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 NT5C1AQ9BXI3 368 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 THAP2Q9H0W7 228 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 RNF208Q9H0X6 261 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 TSPYL2Q9H2G4 693 aaPredicted RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 PDCL3Q9H2J4 239 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 SMYD3Q9H7B4 428 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 AGO3Q9H9G7 860 aaKnown RBP11.26□□□□□ -0.61
CLN3-248ENST00000636355 RSAD1Q9HA92 442 aa11.26□□□□□ -0.61
CLN3-248ENST00000636355 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.26□□□□□ -0.61
CLN3-248ENST00000636355 SALL4Q9UJQ4 1053 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms