RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 SCNN1BP51168 640 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 MAPK6Q16659 721 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 FAM26FQ5R3K3 315 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 PTRHD1Q6GMV3 140 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 LRRC74BQ6ZQY2 392 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 CCDC36Q8IYA8 594 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 ATPAF2Q8N5M1 289 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 RP9Q8TA86 221 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 TFB1MQ8WVM0 346 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 TBATAQ96M53 351 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 SPON2Q9BUD6 331 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 EFCAB1Q9HAE3 211 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 POLG2Q9UHN1 485 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 FAM50BQ9Y247 325 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 HEATR9A2RTY3 570 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 GNRH1P01148 92 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 PDHA1P08559 390 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 HARS2P49590 506 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 PRIM1P49642 420 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 STARP49675 285 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 NT5C2P49902 561 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 UBXN2AP68543 259 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 KLC1Q07866 573 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 XRCC4Q13426 336 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 SLC29A2Q14542 456 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 KCTD16Q68DU8 428 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 RMND5AQ9H871 391 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 PPCSQ9HAB8 311 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 UBE2TQ9NPD8 197 aaPredicted RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 TSR3Q9UJK0 312 aaKnown RBP6.27□□□□□ -1.41
SCN1A-212ENST00000636194 CDYLQ9Y232 598 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 FAM220BPB1ANY3 271 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 ATP9AO75110 1047 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 GPC1P35052 558 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 GALNT18Q6P9A2 607 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 AGMOQ6ZNB7 445 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 MYRIPQ8NFW9 859 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 ZNF507Q8TCN5 953 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 BBS4Q96RK4 519 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 CEP44Q9C0F1 390 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 KCNN2Q9H2S1 579 aa6.27□□□□□ -1.41
SCN1A-212ENST00000636194 CTTNBP2Q8WZ74 1663 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 CCT8L1PA6NM43 557 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 KITP10721 976 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 TYK2P29597 1187 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 CCT3P49368 545 aaKnown RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 TCEA2Q15560 299 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ZSWIM7Q19AV6 140 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 LONRF3Q496Y0 759 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 KCNV1Q6PIU1 500 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 APOL4Q9BPW4 351 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ECSITQ9BQ95 431 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 KATNAL1Q9BW62 490 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 NRDE2Q9H7Z3 1164 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 AHSPQ9NZD4 102 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 CD274Q9NZQ7 290 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 PLCL2Q9UPR0 1127 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SEC16AO15027 2179 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 KANSL1LA0AUZ9 987 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 DDX3XO00571 662 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 APOL1O14791 398 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ZBTB39O15060 712 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ATP8B1O43520 1251 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ITIH2P19823 946 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SERPINB8P50452 374 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 PLEKHA7Q6IQ23 1121 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 BSDC1Q9NW68 430 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 EHD3Q9NZN3 535 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 XPR1Q9UBH6 696 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 IRAK3Q9Y616 596 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ACEP12821 1306 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 C3orf70A6NLC5 250 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 CTIFO43310 598 aaKnown RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 KPNA6O60684 536 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 OR6A2O95222 327 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SERPING1P05155 500 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 BIKQ13323 160 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 C8orf34Q49A92 452 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 EXOC3L1Q86VI1 746 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 MAPKAPK5Q8IW41 473 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 MCRS1Q96EZ8 462 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SPATA9Q9BWV2 254 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 INTS7Q9NVH2 962 aaKnown RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SUCOQ9UBS9 1254 aaKnown RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SYNJ1O43426 1573 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 MIF4GDA9UHW6 222 aaKnown RBP6.26□□□□□ -1.41
SCN1A-212ENST00000636194 PSMD11O00231 422 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 MAGEA2P43356 314 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 PTK6Q13882 451 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 HECTD3Q5T447 861 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SYCP2LQ5T4T6 812 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ULK2Q8IYT8 1036 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 CHAMP1Q96JM3 812 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 PLEKHA4Q9H4M7 779 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ARMT1Q9H993 441 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 MIEF1Q9NQG6 463 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 SLC38A7Q9NVC3 462 aa6.26□□□□□ -1.41
SCN1A-212ENST00000636194 ATAD2BQ9ULI0 1458 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms