RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 RD3Q7Z3Z2 195 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 COLGALT2Q8IYK4 626 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 COA7Q96BR5 231 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 PDLIM2Q96JY6 352 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 AIFM2Q9BRQ8 373 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 KCTD5Q9NXV2 234 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 PCDHB1Q9Y5F3 818 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 ABCA8O94911 1581 aa6.61□□□□□ -1.35
VPS29-212ENST00000621131 CDK13Q14004 1512 aaKnown RBP6.6□□□□□ -1.35
VPS29-212ENST00000621131 NUP153P49790 1475 aaKnown RBP6.6□□□□□ -1.35
VPS29-212ENST00000621131 TEX14Q8IWB6 1497 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 MYOM3Q5VTT5 1437 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 FGD6Q6ZV73 1430 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 CCDC154A6NI56 674 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 SLC43A1O75387 559 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 AGFG2O95081 481 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 ITKQ08881 620 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 FAM50AQ14320 339 aaKnown RBP6.6□□□□□ -1.35
VPS29-212ENST00000621131 ABCB5Q2M3G0 1257 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 C3orf36Q3SXR2 165 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 FLYWCH1Q4VC44 716 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 RNF187Q5TA31 235 aaPredicted RBP6.6□□□□□ -1.35
VPS29-212ENST00000621131 UTP14CQ5TAP6 766 aaKnown RBP6.6□□□□□ -1.35
VPS29-212ENST00000621131 TLR10Q9BXR5 811 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 KIF14Q15058 1648 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 PLB1Q6P1J6 1458 aa6.6□□□□□ -1.35
VPS29-212ENST00000621131 PTPN23Q9H3S7 1636 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 A0A1W2PS29 197 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 SHTN1A0MZ66 631 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 SYCE2Q6PIF2 218 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 TEKT5Q96M29 485 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 LRFN3Q9BTN0 628 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 JKAMPQ9P055 326 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 CALCOCO1Q9P1Z2 691 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 CTTNBP2NLQ9P2B4 639 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 NIPSNAP3AQ9UFN0 247 aaPredicted RBP6.59□□□□□ -1.35
VPS29-212ENST00000621131 TLK1Q9UKI8 766 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 DMTF1Q9Y222 760 aa6.59□□□□□ -1.35
VPS29-212ENST00000621131 KAT6AQ92794 2004 aa6.59□□□□□ -1.36
VPS29-212ENST00000621131 ARHGEF17Q96PE2 2063 aaPredicted RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 MASP2O00187 686 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 MGST3O14880 152 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 XPOTO43592 962 aaKnown RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 KATNA1O75449 491 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 ELLP55199 621 aaPredicted RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 C21orf58P58505 322 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 MRPS35P82673 323 aaKnown RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 KIF23Q02241 960 aaPredicted RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 TLE1Q04724 770 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 RAB39AQ14964 217 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 SF3B3Q15393 1217 aaKnown RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 COLEC12Q5KU26 742 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 SSH3Q8TE77 659 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 CLPTM1LQ96KA5 538 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 KLHL32Q96NJ5 620 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 DUSP26Q9BV47 211 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 SERPINB13Q9UIV8 391 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 TROQ12816 1431 aaPredicted RBP6.58□□□□□ -1.36
VPS29-212ENST00000621131 MIA2Q96PC5 1412 aa6.58□□□□□ -1.36
VPS29-212ENST00000621131 SPATA31A6Q5VVP1 1343 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 MAGI3Q5TCQ9 1506 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 TRGV11A0A075B6L2 103 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 PRAMEF33A0A0G2JMD5 474 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 PRAMEF10O60809 474 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 KCNA2P16389 499 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 GATA3P23771 443 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 CD38P28907 300 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 ODF1Q14990 250 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 KIAA0895LQ68EN5 471 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 BOLLQ8N9W6 283 aaKnown RBP6.57□□□□□ -1.36
VPS29-212ENST00000621131 PRPF38AQ8NAV1 312 aaKnown RBP6.57□□□□□ -1.36
VPS29-212ENST00000621131 KAT5Q92993 513 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 RSAD1Q9HA92 442 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 SEMA4GQ9NTN9 838 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 LRIT1Q9P2V4 623 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 SLC45A2Q9UMX9 530 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 MRFAP1Q9Y605 127 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 UACAQ9BZF9 1416 aa6.57□□□□□ -1.36
VPS29-212ENST00000621131 ABCC2Q92887 1545 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 TNKSO95271 1327 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 WASHC2CQ9Y4E1 1318 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 TCOF1Q13428 1488 aaKnown RBP6.56□□□□□ -1.36
VPS29-212ENST00000621131 PLEKHD1A6NEE1 506 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 IGLV2-14P01704 120 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 SRGNP10124 158 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 FOLR3P41439 243 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 CACNA2D1P54289 1103 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 EVA1CP58658 441 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 MRPS21P82921 87 aaKnown RBP6.56□□□□□ -1.36
VPS29-212ENST00000621131 DSC2Q02487 901 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 PPP4R3AQ6IN85 833 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 VWA1Q6PCB0 445 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 ZNF365Q70YC5 407 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 NSUN6Q8TEA1 469 aaKnown RBP6.56□□□□□ -1.36
VPS29-212ENST00000621131 LRIG1Q96JA1 1093 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 TNFRSF18Q9Y5U5 241 aa6.56□□□□□ -1.36
VPS29-212ENST00000621131 C1QL1O75973 258 aa6.55□□□□□ -1.36
VPS29-212ENST00000621131 CD1AP06126 327 aa6.55□□□□□ -1.36
VPS29-212ENST00000621131 FPGSQ05932 587 aa6.55□□□□□ -1.36
VPS29-212ENST00000621131 DYRK1AQ13627 763 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms