RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 LMAN2LQ9H0V9 348 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 ZBP1Q9H171 429 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 TLR9Q9NR96 1032 aa21.18■□□□□ 0.98
UPF3A-211ENST00000618700 PUF60Q9UHX1 559 aaKnown RBP21.18■□□□□ 0.98
UPF3A-211ENST00000618700 GTPBP10A4D1E9 387 aaKnown RBP21.17■□□□□ 0.98
UPF3A-211ENST00000618700 FSCN2O14926 492 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 SYN3O14994 580 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 CYP11A1P05108 521 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 NOP14P78316 857 aaKnown RBP21.17■□□□□ 0.98
UPF3A-211ENST00000618700 GRIN2CQ14957 1233 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 USP41Q3LFD5 358 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 DSTYKQ6XUX3 929 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 LMO3Q8TAP4 145 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 PI4K2AQ9BTU6 479 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 APOBEC3GQ9HC16 384 aaKnown RBP21.17■□□□□ 0.98
UPF3A-211ENST00000618700 ATG2AQ2TAZ0 1938 aa21.17■□□□□ 0.98
UPF3A-211ENST00000618700 LGALS16A8MUM7 142 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 RFXAPO00287 272 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 CYB561D2O14569 222 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 CTSAP10619 480 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 ODC1P11926 461 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 TYMPP19971 482 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 TKTP29401 623 aaKnown RBP21.16■□□□□ 0.98
UPF3A-211ENST00000618700 GLUD2P49448 558 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 ERVFC1P60507 584 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 DSG1Q02413 1049 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 CETN1Q12798 172 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 WDR72Q3MJ13 1102 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 RTP2Q5QGT7 225 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 SPOPLQ6IQ16 392 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 GPR65Q8IYL9 337 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 PIK3R5Q8WYR1 880 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 ELMO3Q96BJ8 720 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 B3GALT6Q96L58 329 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 TTPALQ9BTX7 342 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 IMPG2Q9BZV3 1241 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 VPS16Q9H269 839 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 PRDM12Q9H4Q4 367 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 MTMR10Q9NXD2 777 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 GCNT4Q9P109 453 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 L1RE1Q9UN81 338 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 SNX9Q9Y5X1 595 aa21.16■□□□□ 0.98
UPF3A-211ENST00000618700 ARHGEF37A1IGU5 675 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 TPM2P07951 284 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 SOWAHAQ2M3V2 549 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 ZNF667Q5HYK9 610 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 KIAA0319Q5VV43 1072 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 GBP6Q6ZN66 633 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 TOP6BLQ8N6T0 577 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 APPL2Q8NEU8 664 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 FAXDC2Q96IV6 333 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 TCF25Q9BQ70 676 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 NIF3L1Q9GZT8 377 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 INTS2Q9H0H0 1204 aaKnown RBP21.15■□□□□ 0.98
UPF3A-211ENST00000618700 RBSNQ9H1K0 784 aa21.15■□□□□ 0.98
UPF3A-211ENST00000618700 LILRB3O75022 631 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 URODP06132 367 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 IRS1P35568 1242 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 ASPAP45381 313 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 TNNC1P63316 161 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 MRPL58Q14197 206 aaKnown RBP21.14■□□□□ 0.97
UPF3A-211ENST00000618700 PTPN14Q15678 1187 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 PDE12Q6L8Q7 609 aaKnown RBP21.14■□□□□ 0.97
UPF3A-211ENST00000618700 DPH6Q7L8W6 267 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 TMC7Q7Z402 723 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 PDCL2Q8N4E4 241 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 EFCAB3Q8N7B9 438 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 EHBP1Q8NDI1 1231 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 MRPL38Q96DV4 380 aaKnown RBP21.14■□□□□ 0.97
UPF3A-211ENST00000618700 FAM161BQ96MY7 647 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 CRACR2AQ9BSW2 395 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 UTP3Q9NQZ2 479 aaKnown RBP eCLIP21.14■□□□□ 0.97
UPF3A-211ENST00000618700 NXF1Q9UBU9 619 aaKnown RBP21.14■□□□□ 0.97
UPF3A-211ENST00000618700 DSEQ9UL01 958 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 POLIQ9UNA4 740 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 IRAK3Q9Y616 596 aa21.14■□□□□ 0.97
UPF3A-211ENST00000618700 MYO9BQ13459 2157 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 PES1O00541 588 aaKnown RBP21.13■□□□□ 0.97
UPF3A-211ENST00000618700 HUS1O60921 280 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 P4HA1P13674 534 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 FANCCQ00597 558 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 EXOC3L4Q17RC7 722 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 WDR44Q5JSH3 913 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 VARS2Q5ST30 1063 aaKnown RBP21.13■□□□□ 0.97
UPF3A-211ENST00000618700 WSCD1Q658N2 575 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 CEP57Q86XR8 500 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 CCDC150Q8NCX0 1101 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 LNX1Q8TBB1 728 aaPredicted RBP21.13■□□□□ 0.97
UPF3A-211ENST00000618700 SPATA18Q8TC71 538 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 KBTBD7Q8WVZ9 684 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 GUCD1Q96NT3 240 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 BCO2Q9BYV7 579 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 SMYD3Q9H7B4 428 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 NGRNQ9NPE2 291 aaKnown RBP21.13■□□□□ 0.97
UPF3A-211ENST00000618700 ENTPD7Q9NQZ7 604 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 MTRRQ9UBK8 725 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 PCDHGC5Q9Y5F6 944 aa21.13■□□□□ 0.97
UPF3A-211ENST00000618700 TIMM13Q9Y5L4 95 aaPredicted RBP21.13■□□□□ 0.97
UPF3A-211ENST00000618700 A0A1B0GTH6 734 aa21.12■□□□□ 0.97
UPF3A-211ENST00000618700 TACC1O75410 805 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms