RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 MANSC1Q9H8J5 431 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 WRAP73Q9P2S5 460 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 NUP98P52948 1817 aa13.28□□□□□ -0.28
LIG1-221ENST00000613670 TRPM3Q9HCF6 1732 aaPredicted RBP13.28□□□□□ -0.28
LIG1-221ENST00000613670 A0A1W2PPM1 405 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 ZCCHC18P0CG32 403 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 SRGAP2CP0DJJ0 459 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 RIPK1Q13546 671 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 KLHL38Q2WGJ6 581 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 THEMIS2Q5TEJ8 643 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 MFSD5Q6N075 450 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 MIS18BP1Q6P0N0 1132 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 ENOSF1Q7L5Y1 443 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 NLGN1Q8N2Q7 840 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 FEZF2Q8TBJ5 459 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 STK32AQ8WU08 396 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 SHC3Q92529 594 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 SH3GL3Q99963 347 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 THTPAQ9BU02 230 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 CYP4F11Q9HBI6 524 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 ARMCX1Q9P291 453 aa13.27□□□□□ -0.28
LIG1-221ENST00000613670 MYH7BA7E2Y1 1941 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 C21orf2O43822 256 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 FOXN2P32314 431 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 ALDH18A1P54886 795 aaKnown RBP13.27□□□□□ -0.29
LIG1-221ENST00000613670 RCOR2Q8IZ40 523 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 TAAR1Q96RJ0 339 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 ADAM7Q9H2U9 754 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 GINS2Q9Y248 185 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 IGKV6D-41A0A0C4DH26 115 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 CYP1A2P05177 515 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 GNAT1P11488 350 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 MPP2Q14168 576 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 EEPD1Q7L9B9 569 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 KIAA1586Q9HCI6 787 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 MAGED2Q9UNF1 606 aaPredicted RBP13.27□□□□□ -0.29
LIG1-221ENST00000613670 USP54Q70EL1 1684 aa13.27□□□□□ -0.29
LIG1-221ENST00000613670 WEE2P0C1S8 567 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 CHRNB2P17787 502 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 GTF2H1P32780 548 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 TAS2R40P59535 323 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 MRPS35P82673 323 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 FASTKD3Q14CZ7 662 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 TCP10LQ8TDR4 215 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 JDP2Q8WYK2 163 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 ZNF75CPQ92670 426 aaPredicted RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 SHCBP1LQ9BZQ2 653 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FAM198AQ9UFP1 575 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 XPO7Q9UIA9 1087 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 PIK3CDO00329 1044 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 BRD2P25440 801 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 JAK3P52333 1124 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 GEMIN4P57678 1058 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 TKFCQ3LXA3 575 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FAM182AQ5T1J6 154 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FAXCQ5TGI0 409 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 C1orf228Q6PIY5 440 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 ZDHHC14Q8IZN3 488 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 RIBC1Q8N443 379 aaPredicted RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 FAM71DQ8N9W8 422 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 ZDHHC15Q96MV8 337 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 ACAP3Q96P50 834 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 TUBB6Q9BUF5 446 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 NGRNQ9NPE2 291 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 PCDHA10Q9Y5I2 948 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 SPECC1L-ADORA2AF8WAN1 911 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 NDC80O14777 642 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 SERPINB4P48594 390 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 PSMC1P62191 440 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 KRT76Q01546 638 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 PTK7Q13308 1070 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 SNX30Q5VWJ9 437 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 LRRC6Q86X45 466 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FAM13CQ8NE31 585 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FBXO36Q8NEA4 188 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.26□□□□□ -0.29
LIG1-221ENST00000613670 NSL1Q96IY1 281 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 FGD4Q96M96 766 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 PAFAH2Q99487 392 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 TARS2Q9BW92 718 aaKnown RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 ANGPTL2Q9UKU9 493 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 ZBTB12Q9Y330 459 aaPredicted RBP13.26□□□□□ -0.29
LIG1-221ENST00000613670 MYH3P11055 1940 aa13.26□□□□□ -0.29
LIG1-221ENST00000613670 NCF2P19878 526 aaPredicted RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 TAF1P21675 1872 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 SERPINB3P29508 390 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 PTDSS1P48651 473 aaKnown RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 EIF3EP60228 445 aaKnown RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 PDE1BQ01064 536 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 PPP6R3Q5H9R7 873 aaPredicted RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 ARID3BQ8IVW6 561 aaPredicted RBP13.25□□□□□ -0.29
LIG1-221ENST00000613670 MCPH1Q8NEM0 835 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 SEC14L1Q92503 715 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 DCLRE1BQ9H816 532 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 FEM1BQ9UK73 627 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 IVNS1ABPQ9Y6Y0 642 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 KRT37O76014 449 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 ITGB5P18084 799 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 PTPN4P29074 926 aa13.25□□□□□ -0.29
LIG1-221ENST00000613670 VHLP40337 213 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms