RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TRAPPC11Q7Z392 1133 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 KREMEN2Q8NCW0 462 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 GPT2Q8TD30 523 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 PARD3BQ8TEW8 1205 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 NELFBQ8WX92 580 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 DHTKD1Q96HY7 919 aaPredicted RBP11.94□□□□□ -0.5
LIG1-211ENST00000596457 DZANK1Q9NVP4 752 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 SIX4Q9UIU6 781 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 CDH22Q9UJ99 828 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 FBXL5Q9UKA1 691 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 SNX9Q9Y5X1 595 aa11.94□□□□□ -0.5
LIG1-211ENST00000596457 TSC2P49815 1807 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 CCDC195A0A1B0GUA6 201 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 PPP1R3GB7ZBB8 358 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 CST3P01034 146 aaPredicted RBP11.93□□□□□ -0.5
LIG1-211ENST00000596457 OR4Q2P0C623 313 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 TRIM49P0CI25 452 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 TRIM49CP0CI26 452 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 EPB41P11171 864 aaKnown RBP11.93□□□□□ -0.5
LIG1-211ENST00000596457 CPB1P15086 417 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 BMP6P22004 513 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 ELF1P32519 619 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 PNPLA4P41247 253 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 VAMP7P51809 220 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 SMAD4Q13485 552 aaKnown RBP11.93□□□□□ -0.5
LIG1-211ENST00000596457 NFIL3Q16649 462 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 EDRF1Q3B7T1 1238 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 ZCWPW2Q504Y3 356 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 COBLL1Q53SF7 1204 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 WSCD1Q658N2 575 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 CENPPQ6IPU0 288 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 CES5AQ6NT32 575 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 ELMSAN1Q6PJG2 1045 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 GPR65Q8IYL9 337 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 GJD3Q8N144 294 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 THEM5Q8N1Q8 247 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 FEZF2Q8TBJ5 459 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 ELMO3Q96BJ8 720 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 HPDLQ96IR7 371 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.93□□□□□ -0.54e-14■■■■■ 61.1
LIG1-211ENST00000596457 DPP7Q9UHL4 492 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 USP15Q9Y4E8 981 aaPredicted RBP11.93□□□□□ -0.5
LIG1-211ENST00000596457 BACE2Q9Y5Z0 518 aa11.93□□□□□ -0.5
LIG1-211ENST00000596457 ARHGEF37A1IGU5 675 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 PI4K2BG5E9Z4 385 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 HUS1O60921 280 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 RFPL2O75678 378 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 ALADP13716 330 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 HOXB8P17481 243 aaPredicted RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 TYMPP19971 482 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 SP100P23497 879 aaPredicted RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 PAX3P23760 479 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 PPP1R2P41236 205 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 AARSP49588 968 aaKnown RBP eCLIP11.92□□□□□ -0.5
LIG1-211ENST00000596457 MYL6P60660 151 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 FKBP3Q00688 224 aaKnown RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 ROR1Q01973 937 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 RAB33AQ14088 237 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 MRPL58Q14197 206 aaKnown RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 SMAD2Q15796 467 aaKnown RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 PPM1LQ5SGD2 360 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 LIN9Q5TKA1 542 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 TCERG1LQ5VWI1 586 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 TDRD10Q5VZ19 366 aaKnown RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 LILRA6Q6PI73 481 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 CREBRFQ8IUR6 639 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 ADHFE1Q8IWW8 467 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 LRRC52Q8N7C0 313 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 TRIML1Q8N9V2 468 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 SMRP1Q8NCR6 262 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 TMC2Q8TDI7 906 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 BORCS6Q96GS4 357 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 PGLYRP2Q96PD5 576 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 TMEM209Q96SK2 561 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 MMS19Q96T76 1030 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 GZF1Q9H116 711 aaPredicted RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 S1PR5Q9H228 398 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 SFXN1Q9H9B4 322 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 PIDD1Q9HB75 910 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 C11orf16Q9NQ32 467 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 NXF1Q9UBU9 619 aaKnown RBP11.92□□□□□ -0.5
LIG1-211ENST00000596457 DSEQ9UL01 958 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 POLIQ9UNA4 740 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 C2orf16Q68DN1 1984 aa11.92□□□□□ -0.5
LIG1-211ENST00000596457 BICDL2A1A5D9 508 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 WDR27A2RRH5 827 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 C19orf67A6NJJ6 358 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 PRRG1O14668 218 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 MAPK13O15264 365 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 CCL16O15467 120 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 C4BPAP04003 597 aaKnown RBP11.91□□□□□ -0.5
LIG1-211ENST00000596457 C8AP07357 584 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 SSTR3P32745 418 aaPredicted RBP11.91□□□□□ -0.5
LIG1-211ENST00000596457 GCLMP48507 274 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 AP3M2P53677 418 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 TNNC1P63316 161 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 LRRC63Q05C16 580 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 ITIH3Q06033 890 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 PAK1Q13153 545 aa11.91□□□□□ -0.5
LIG1-211ENST00000596457 CCDC40Q4G0X9 1142 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms