RNA–Protein interactions for RNA: ENST00000583965.5

CDRT1-207, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best) BASIC

Gene CDRT1, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-207ENST00000583965 BCO2Q9BYV7 579 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 CYP3A43Q9HB55 503 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 APOBEC3GQ9HC16 384 aaKnown RBP12.5□□□□□ -0.41
CDRT1-207ENST00000583965 SIX2Q9NPC8 291 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 NXF1Q9UBU9 619 aaKnown RBP12.5□□□□□ -0.41
CDRT1-207ENST00000583965 DSEQ9UL01 958 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 PCDHB8Q9UN66 801 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 YBX2Q9Y2T7 364 aaKnown RBP12.5□□□□□ -0.41
CDRT1-207ENST00000583965 SNX9Q9Y5X1 595 aa12.5□□□□□ -0.41
CDRT1-207ENST00000583965 COL4A4P53420 1690 aaPredicted RBP12.5□□□□□ -0.41
CDRT1-207ENST00000583965 F8W810 466 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 HUS1O60921 280 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 LRRN2O75325 713 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TACC1O75410 805 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 EFEMP2O95967 443 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 CYP11A1P05108 521 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 UCHL3P15374 230 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TRIM21P19474 475 aaKnown RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TYMPP19971 482 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 DNAJB2P25686 324 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 PBX2P40425 430 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 MFAP3P55082 362 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TAP1Q03518 808 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 CUL2Q13617 745 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TRIM14Q14142 442 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 SPECC1LQ69YQ0 1117 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 PHLDB3Q6NSJ2 640 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 DPY19L2P1Q6NXN4 242 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 DDX53Q86TM3 631 aaKnown RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 VSTM4Q8IW00 320 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 RNF168Q8IYW5 571 aaPredicted RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 PPM1KQ8N3J5 372 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 TATDN2Q93075 761 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 MMS19Q96T76 1030 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 C11orf84Q9BUA3 381 aaPredicted RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 EDEM3Q9BZQ6 932 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 GANQ9H2C0 597 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 SLC28A3Q9HAS3 691 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 FAM207AQ9NSI2 230 aaPredicted RBP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 LZTS1Q9Y250 596 aa12.49□□□□□ -0.41
CDRT1-207ENST00000583965 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.49□□□□□ -0.41
CDRT1-207ENST00000583965 MYO7AQ13402 2215 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 FGF18O76093 207 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 NOL4O94818 638 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 SOD2P04179 222 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 IGFBP6P24592 240 aaPredicted RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 ASPAP45381 313 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 BRCC3P46736 316 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 KLK7P49862 253 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 UBE3AQ05086 875 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 LRMPQ12912 555 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 SOWAHAQ2M3V2 549 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 USP41Q3LFD5 358 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 HS1BP3Q53T59 392 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 PPP2R2DQ66LE6 453 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 PDXDC1Q6P996 788 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 TMEM173Q86WV6 379 aaPredicted RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 METTL23Q86XA0 190 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 ARHGEF19Q8IW93 802 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 GPR65Q8IYL9 337 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 KLHL23Q8NBE8 558 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 BCL7CQ8WUZ0 217 aaPredicted RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 HERC2P3Q9BVR0 1158 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 GPR62Q9BZJ7 368 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 DNAI2Q9GZS0 605 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 NKX2-4Q9H2Z4 354 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 UBE2TQ9NPD8 197 aaPredicted RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 CEP72Q9P209 647 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 PUF60Q9UHX1 559 aaKnown RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 POLIQ9UNA4 740 aa12.48□□□□□ -0.41
CDRT1-207ENST00000583965 COLQQ9Y215 455 aaPredicted RBP12.48□□□□□ -0.41
CDRT1-207ENST00000583965 A0A1W2PQJ5 194 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 ARHGEF15O94989 841 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 FGFR3P22607 806 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 WARSP23381 471 aaKnown RBP12.47□□□□□ -0.41
CDRT1-207ENST00000583965 LHX1P48742 406 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 POLR2FP61218 127 aaKnown RBP12.47□□□□□ -0.41
CDRT1-207ENST00000583965 INCA1Q0VD86 236 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 FAM171A1Q5VUB5 890 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 IQCEQ6IPM2 695 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 SCARA5Q6ZMJ2 495 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 RRAGAQ7L523 313 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 FMNL3Q8IVF7 1028 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 ADGRF2Q8IZF7 708 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 PDCL2Q8N4E4 241 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 FBXO22Q8NEZ5 403 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 TIFAQ96CG3 184 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 C17orf80Q9BSJ5 609 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 TTPALQ9BTX7 342 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 NAA15Q9BXJ9 866 aaKnown RBP12.47□□□□□ -0.41
CDRT1-207ENST00000583965 OXCT2Q9BYC2 517 aaPredicted RBP12.47□□□□□ -0.41
CDRT1-207ENST00000583965 SMYD3Q9H7B4 428 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 DNAJC12Q9UKB3 198 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 MYO6Q9UM54 1294 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 L1RE1Q9UN81 338 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 SSX2IPQ9Y2D8 614 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 FHOD1Q9Y613 1164 aa12.47□□□□□ -0.41
CDRT1-207ENST00000583965 TMEM265A0A087WTH1 108 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms