RNA–Protein interactions for RNA: ENST00000580713.1

TOP3A-210, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 474 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-210ENST00000580713 HOXB1P14653 301 aaPredicted RBP11.76□□□□□ -0.53
TOP3A-210ENST00000580713 GCFC2P16383 781 aaKnown RBP11.76□□□□□ -0.53
TOP3A-210ENST00000580713 EMP3P54852 163 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 ELF2Q15723 593 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 UPP1Q16831 310 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 CTXN3Q4LDR2 81 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 TPGS2Q68CL5 300 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 CD300LGQ6UXG3 332 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 NEK8Q86SG6 692 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 SHKBP1Q8TBC3 707 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 HAS1Q92839 578 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 GATA6Q92908 595 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 RSPRY1Q96DX4 576 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 ZFYVE19Q96K21 471 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 AIFM3Q96NN9 605 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 EIF2AK1Q9BQI3 630 aaKnown RBP11.76□□□□□ -0.53
TOP3A-210ENST00000580713 GPRC5CQ9NQ84 441 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 ANKEF1Q9NU02 776 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 GTSE1Q9NYZ3 720 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 MTMR6Q9Y217 621 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 USP20Q9Y2K6 914 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 ZDHHC9Q9Y397 364 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 COL4A2P08572 1712 aa11.76□□□□□ -0.53
TOP3A-210ENST00000580713 SPEGQ15772 3267 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 A0A087WWV3 80 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 CCDC163A0A0D9SF12 145 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 A0A1W2PRU2 124 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 M0R2N6 131 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 AKAP3O75969 853 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 RHOBTB1O94844 696 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 XBP1P17861 261 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 CCINQ13939 588 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 TRIM29Q14134 588 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 MAPK6Q16659 721 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FAM187BQ17R55 369 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 PLK5Q496M5 336 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 ARHGAP29Q52LW3 1261 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FOXD4L5Q5VV16 416 aaPredicted RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 GALNT17Q6IS24 598 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 KIAA1211LQ6NV74 962 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 PKN3Q6P5Z2 889 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 ARID3BQ8IVW6 561 aaPredicted RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 DAGLBQ8NCG7 672 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 C3orf58Q8NDZ4 430 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FBXO18Q8NFZ0 1043 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 PIGOQ8TEQ8 1089 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FOXD4L4Q8WXT5 416 aaPredicted RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 ZC3H10Q96K80 434 aaKnown RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 PPP1R10Q96QC0 940 aaKnown RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 C2orf40Q9H1Z8 148 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FZD8Q9H461 694 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 AFF4Q9UHB7 1163 aaKnown RBP11.75□□□□□ -0.53
TOP3A-210ENST00000580713 FBXL5Q9UKA1 691 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 WASF3Q9UPY6 502 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 NUB1Q9Y5A7 615 aa11.75□□□□□ -0.53
TOP3A-210ENST00000580713 ASPMQ8IZT6 3477 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 FAM205CA6NFA0 338 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 ATG13O75143 517 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 F13A1P00488 732 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 CEACAM1P13688 526 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 CPB1P15086 417 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 RARRES1P49788 294 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 EPHA5P54756 1037 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 GUCY1B3Q02153 619 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 FCHO2Q0JRZ9 810 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 UAP1L1Q3KQV9 507 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 DCAF4L1Q3SXM0 396 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 EEF1DP3Q658K8 133 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 SLFN12Q8IYM2 578 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 OXER1Q8TDS5 423 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 TMEM209Q96SK2 561 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 NAP1L4Q99733 375 aaKnown RBP11.74□□□□□ -0.53
TOP3A-210ENST00000580713 DUSP15Q9H1R2 295 aaPredicted RBP11.74□□□□□ -0.53
TOP3A-210ENST00000580713 TMEM9BQ9NQ34 198 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 PLSCR2Q9NRY7 297 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 KCNJ14Q9UNX9 436 aa11.74□□□□□ -0.53
TOP3A-210ENST00000580713 PDCD11Q14690 1871 aaKnown RBP11.74□□□□□ -0.53
TOP3A-210ENST00000580713 BCLAF3A2AJT9 711 aaKnown RBP11.73□□□□□ -0.53
TOP3A-210ENST00000580713 PODXLO00592 558 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 SYN3O14994 580 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 DCLK1O15075 740 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 LYPLA2O95372 231 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 ATP2B1P20020 1258 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 GBP1P32455 592 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 YARSP54577 528 aaKnown RBP11.73□□□□□ -0.53
TOP3A-210ENST00000580713 TNK2Q07912 1038 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 GRSF1Q12849 480 aaKnown RBP eCLIP11.73□□□□□ -0.53
TOP3A-210ENST00000580713 PTPAQ15257 358 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 NPY5RQ15761 445 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 STXBP5Q5T5C0 1151 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 ARID2Q68CP9 1835 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 CDCA2Q69YH5 1023 aaPredicted RBP11.73□□□□□ -0.53
TOP3A-210ENST00000580713 ZNF280DQ6N043 979 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 RNF19BQ6ZMZ0 732 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 DEPTORQ8TB45 409 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 HHIPQ96QV1 700 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 GJB4Q9NTQ9 266 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 YIPF1Q9Y548 306 aa11.73□□□□□ -0.53
TOP3A-210ENST00000580713 SMIM28A0A1B0GU29 152 aa11.72□□□□□ -0.53
TOP3A-210ENST00000580713 LNP1A1A4G5 178 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms