RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 MRPL58Q14197 206 aaKnown RBP21■□□□□ 0.95
SS18-209ENST00000578595 PSMD6Q15008 389 aa21■□□□□ 0.95
SS18-209ENST00000578595 ZNF461Q8TAF7 563 aa21■□□□□ 0.95
SS18-209ENST00000578595 TIGD1Q96MW7 591 aa21■□□□□ 0.95
SS18-209ENST00000578595 PGLYRP2Q96PD5 576 aa21■□□□□ 0.95
SS18-209ENST00000578595 PRKD2Q9BZL6 878 aa21■□□□□ 0.95
SS18-209ENST00000578595 KCTD10Q9H3F6 313 aa21■□□□□ 0.95
SS18-209ENST00000578595 DSEQ9UL01 958 aa21■□□□□ 0.95
SS18-209ENST00000578595 FRMD4BQ9Y2L6 1034 aa21■□□□□ 0.95
SS18-209ENST00000578595 CLUHO75153 1309 aa21■□□□□ 0.95
SS18-209ENST00000578595 C19orf67A6NJJ6 358 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 PHACTR2O75167 634 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 PRPF40AO75400 957 aaKnown RBP20.99■□□□□ 0.95
SS18-209ENST00000578595 GBP2P32456 591 aaPredicted RBP20.99■□□□□ 0.95
SS18-209ENST00000578595 BIRC3Q13489 604 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 ISM2Q6H9L7 571 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 GET4Q7L5D6 327 aaPredicted RBP20.99■□□□□ 0.95
SS18-209ENST00000578595 RNF135Q8IUD6 432 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 THEM5Q8N1Q8 247 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 GUF1Q8N442 669 aaKnown RBP20.99■□□□□ 0.95
SS18-209ENST00000578595 GSDMAQ96QA5 445 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 PCDHA5Q9Y5H7 936 aa20.99■□□□□ 0.95
SS18-209ENST00000578595 OR6C75A6NL08 312 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 C2CD4DB7Z1M9 353 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 LOC730098B7Z3J9 87 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 HUS1O60921 280 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 OAZ2O95190 189 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 HNRNPA1P09651 372 aaKnown RBP eCLIP20.98■□□□□ 0.95
SS18-209ENST00000578595 NR2F2P24468 414 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 CASP4P49662 377 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 UBE2HP62256 183 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 ADCY1Q08828 1119 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 TRPC3Q13507 836 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 WSCD1Q658N2 575 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 TPGS2Q68CL5 300 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 CYP26C1Q6V0L0 522 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 GRASPQ7Z6J2 395 aaPredicted RBP20.98■□□□□ 0.95
SS18-209ENST00000578595 LRRC52Q8N7C0 313 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 ZNF707Q96C28 371 aaPredicted RBP20.98■□□□□ 0.95
SS18-209ENST00000578595 ACSF2Q96CM8 615 aaPredicted RBP20.98■□□□□ 0.95
SS18-209ENST00000578595 OXCT2Q9BYC2 517 aaPredicted RBP20.98■□□□□ 0.95
SS18-209ENST00000578595 MUTYHQ9UIF7 546 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 SIX4Q9UIU6 781 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 SNX9Q9Y5X1 595 aa20.98■□□□□ 0.95
SS18-209ENST00000578595 TBC1D4O60343 1298 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 ATF2P15336 505 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 CDR1P51861 262 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 UVSSAQ2YD98 709 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 ZNF658Q5TYW1 1059 aaPredicted RBP20.97■□□□□ 0.95
SS18-209ENST00000578595 RNF19BQ6ZMZ0 732 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 OTOP3Q7RTS5 596 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 TRAPPC11Q7Z392 1133 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 KHSRPQ92945 711 aaKnown RBP eCLIP20.97■□□□□ 0.955e-10■■■□□ 17.6
SS18-209ENST00000578595 HPDLQ96IR7 371 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 TSG101Q99816 390 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 AFF4Q9UHB7 1163 aaKnown RBP20.97■□□□□ 0.95
SS18-209ENST00000578595 MYH10P35580 1976 aa20.97■□□□□ 0.95
SS18-209ENST00000578595 ABLIM3O94929 683 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 CYP11A1P05108 521 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 RPL13P26373 211 aaKnown RBP20.96■□□□□ 0.95
SS18-209ENST00000578595 HOXA9P31269 272 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 NTHL1P78549 312 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 STIM1Q13586 685 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 SLC39A12Q504Y0 691 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 SCARA3Q6AZY7 606 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 SLC9A9Q8IVB4 645 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 ELMOD1Q8N336 334 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 MFSD14AQ96MC6 490 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 TMEM209Q96SK2 561 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 WDR6Q9NNW5 1121 aaKnown RBP20.96■□□□□ 0.95
SS18-209ENST00000578595 INSL5Q9Y5Q6 135 aa20.96■□□□□ 0.95
SS18-209ENST00000578595 NOTCH4Q99466 2003 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 DCXO43602 365 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 SEC24AO95486 1093 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 KRT13P13646 458 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 ALADP13716 330 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 MYBPC2Q14324 1141 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 MMS19Q96T76 1030 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 EPHX3Q9H6B9 360 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 TRAF3IP3Q9Y228 551 aa20.95■□□□□ 0.94
SS18-209ENST00000578595 LRRIQ3A6PVS8 624 aaPredicted RBP20.94■□□□□ 0.94
SS18-209ENST00000578595 BIN1O00499 593 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 FSHRP23945 695 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 PRCPP42785 496 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 MYL7Q01449 175 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 TSPY1Q01534 308 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 ADAM9Q13443 819 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 FAM186BQ8IYM0 893 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 TCEAL8Q8IYN2 117 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 ADGRF2Q8IZF7 708 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 PLCD3Q8N3E9 789 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 PDCL2Q8N4E4 241 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 OR10T2Q8NGX3 314 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 GTPBP4Q9BZE4 634 aaKnown RBP20.94■□□□□ 0.94
SS18-209ENST00000578595 MMRN2Q9H8L6 949 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 DMAC2Q9NW81 257 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 HCFC1R1Q9NWW0 138 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 L1RE1Q9UN81 338 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 USTQ9Y2C2 406 aa20.94■□□□□ 0.94
SS18-209ENST00000578595 YIPF1Q9Y548 306 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms