RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ASAH2Q9NR71 780 aa14.85□□□□□ -0.03
CCDC40-216ENST00000576241 FBXO2Q9UK22 296 aaPredicted RBP14.85□□□□□ -0.03
CCDC40-216ENST00000576241 CPSF3Q9UKF6 684 aaKnown RBP14.85□□□□□ -0.03
CCDC40-216ENST00000576241 DERAQ9Y315 318 aa14.85□□□□□ -0.03
CCDC40-216ENST00000576241 SRPRBQ9Y5M8 271 aaKnown RBP14.85□□□□□ -0.03
CCDC40-216ENST00000576241 MYH11P35749 1972 aa14.85□□□□□ -0.03
CCDC40-216ENST00000576241 KANSL1LA0AUZ9 987 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 ANKRD63C9JTQ0 380 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 NFICP08651 508 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 TYMPP19971 482 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 ACOT2P49753 483 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 CEBPZQ03701 1054 aaKnown RBP14.84□□□□□ -0.03
CCDC40-216ENST00000576241 DMWDQ09019 674 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 RESTQ13127 1097 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 UBXN2BQ14CS0 331 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 OVOS1Q6IE37 1185 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 USP49Q70CQ1 688 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 SV2BQ7L1I2 683 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 SFR1Q86XK3 245 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 ELSPBP1Q96BH3 223 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 HVCN1Q96D96 273 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 TCEAL4Q96EI5 215 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 PGLYRP2Q96PD5 576 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 BCO2Q9BYV7 579 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 ASB7Q9H672 318 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 ZFP14Q9HCL3 533 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 CEP72Q9P209 647 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 SEL1LQ9UBV2 794 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 AGO2Q9UKV8 859 aaKnown RBP14.84□□□□□ -0.03
CCDC40-216ENST00000576241 USP18Q9UMW8 372 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 YIPF1Q9Y548 306 aa14.84□□□□□ -0.03
CCDC40-216ENST00000576241 PPEF2O14830 753 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 OR4Q2P0C623 313 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 MYL4P12829 197 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 GLULP15104 373 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 GAP43P17677 238 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 TGM1P22735 817 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 CCR2P41597 374 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 EPHB3P54753 998 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 LILRA4P59901 499 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 GPR17Q13304 367 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 MYBPC2Q14324 1141 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 POSTNQ15063 836 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 FAM78AQ5JUQ0 283 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 C9orf57Q5W0N0 161 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 TANGO2Q6ICL3 276 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 ARMCX5Q6P1M9 558 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 ZNF720Q7Z2F6 126 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 HS6ST3Q8IZP7 471 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 POMGNT1Q8WZA1 660 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 SECISBP2LQ93073 1101 aaKnown RBP14.83□□□□□ -0.04
CCDC40-216ENST00000576241 INTS4Q96HW7 963 aaKnown RBP14.83□□□□□ -0.04
CCDC40-216ENST00000576241 SENP8Q96LD8 212 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 CLIC6Q96NY7 704 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 SLITRK6Q9H5Y7 841 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 MRPL44Q9H9J2 332 aaKnown RBP14.83□□□□□ -0.04
CCDC40-216ENST00000576241 EXOC7Q9UPT5 735 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 C2CD2Q9Y426 696 aa14.83□□□□□ -0.04
CCDC40-216ENST00000576241 FAM170BA6NMN3 283 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 TISP43B9A030 160 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 SPTLC1O15269 473 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 FCARP24071 287 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 STAT6P42226 847 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 ALDH1A3P47895 512 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 FAM173BQ6P4H8 233 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 CCDC73Q6ZRK6 1079 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 TPRG1Q6ZUI0 275 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 DNASE1L2Q92874 299 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 SMARCD2Q92925 531 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 ASB16Q96NS5 453 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 DDX23Q9BUQ8 820 aaKnown RBP14.82□□□□□ -0.04
CCDC40-216ENST00000576241 TRMT61BQ9BVS5 477 aaKnown RBP14.82□□□□□ -0.04
CCDC40-216ENST00000576241 OSBPL6Q9BZF3 934 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 PLA2G2FQ9BZM2 168 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 BRD9Q9H8M2 597 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 DSEQ9UL01 958 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 STYXL1Q9Y6J8 313 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 DOCK6Q96HP0 2047 aa14.82□□□□□ -0.04
CCDC40-216ENST00000576241 PDCD11Q14690 1871 aaKnown RBP14.81□□□□□ -0.04
CCDC40-216ENST00000576241 ANO9A1A5B4 782 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 MYMKA6NI61 221 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 TULP1O00294 542 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-216ENST00000576241 LRRN2O75325 713 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 CD72P21854 359 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 MAGEA9P43362 315 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 EPHA5P54756 1037 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 POU5F1Q01860 360 aaKnown RBP14.81□□□□□ -0.04
CCDC40-216ENST00000576241 DUSP4Q13115 394 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 GRM2Q14416 872 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 ZNF852Q6ZMS4 543 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 METTL23Q86XA0 190 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 ACCSQ96QU6 501 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 NELL2Q99435 816 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 GPR88Q9GZN0 384 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 ZSCAN16Q9H4T2 348 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-216ENST00000576241 PARD6AQ9NPB6 346 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 LTB4R2Q9NPC1 389 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 FOXD4L1Q9NU39 408 aa14.81□□□□□ -0.04
CCDC40-216ENST00000576241 SPATA6Q9NWH7 488 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-216ENST00000576241 DPP3Q9NY33 737 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms