RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SPATA1Q5VX52 437 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 CENPPQ6IPU0 288 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 GPBP1Q86WP2 473 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 LRRC15Q8TF66 581 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 TMX3Q96JJ7 454 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 SMG5Q9UPR3 1016 aaKnown RBP22.89■■□□□ 1.25
VPS53-216ENST00000574029 CACNA1AO00555 2505 aa22.89■■□□□ 1.25
VPS53-216ENST00000574029 A0A0B4J269 797 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 A0A1W2PRU2 124 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 HEPACAM2A8MVW5 462 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 H3BQV1 296 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 PPEF2O14830 753 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 EPHB3P54753 998 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 OVOS1Q6IE37 1185 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 CD302Q8IX05 232 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 MYCT1Q8N699 235 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 GPR161Q8N6U8 529 aaKnown RBP22.88■■□□□ 1.25
VPS53-216ENST00000574029 RSPRY1Q96DX4 576 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 CALML4Q96GE6 196 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 LMAN1LQ9HAT1 526 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 BLOC1S4Q9NUP1 217 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 CPSF3Q9UKF6 684 aaKnown RBP22.88■■□□□ 1.25
VPS53-216ENST00000574029 ANK1P16157 1881 aa22.88■■□□□ 1.25
VPS53-216ENST00000574029 MED19A0JLT2 244 aaPredicted RBP22.87■■□□□ 1.25
VPS53-216ENST00000574029 MTMR11A4FU01 709 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 K7ENM7 598 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 FAM13AO94988 1023 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 PAX3P23760 479 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 ALDH1A3P47895 512 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 LILRA4P59901 499 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 JADE1Q6IE81 842 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 SLC39A4Q6P5W5 647 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 SLITRK6Q9H5Y7 841 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 PARVGQ9HBI0 331 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 HSFX1Q9UBD0 423 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 SLC27A5Q9Y2P5 690 aa22.87■■□□□ 1.25
VPS53-216ENST00000574029 NUP210Q8TEM1 1887 aaPredicted RBP22.87■■□□□ 1.25
VPS53-216ENST00000574029 FRYLO94915 3013 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 WDR87Q6ZQQ6 2873 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 TRAK2O60296 914 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 CHRNB1P11230 501 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 UBA7P41226 1012 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 NRLP54845 237 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 FCHO2Q0JRZ9 810 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 RSPO4Q2I0M5 234 aaPredicted RBP22.86■■□□□ 1.25
VPS53-216ENST00000574029 SECISBP2LQ93073 1101 aaKnown RBP22.86■■□□□ 1.25
VPS53-216ENST00000574029 PSMG2Q969U7 264 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 MSANTD3Q96H12 275 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 SENP8Q96LD8 212 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 FIZ1Q96SL8 496 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 MKNK1Q9BUB5 465 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 MSTO1Q9BUK6 570 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 ASB3Q9Y575 518 aa22.86■■□□□ 1.25
VPS53-216ENST00000574029 PIRO00625 290 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 CHADO15335 359 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 ODC1P11926 461 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 CCNE1P24864 410 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 CCR3P51677 355 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 GTF2BQ00403 316 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 DHX8Q14562 1220 aaKnown RBP22.85■■□□□ 1.25
VPS53-216ENST00000574029 PPP2R5DQ14738 602 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 STXBP5Q5T5C0 1151 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 C9orf57Q5W0N0 161 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 DNAJB7Q7Z6W7 309 aaPredicted RBP22.85■■□□□ 1.25
VPS53-216ENST00000574029 ATAD1Q8NBU5 361 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 CSGALNACT1Q8TDX6 532 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 FAM212AQ96EL1 285 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 TMEM209Q96SK2 561 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 DERAQ9Y315 318 aa22.85■■□□□ 1.25
VPS53-216ENST00000574029 ANO9A1A5B4 782 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 CD2BP2O95400 341 aaKnown RBP22.84■■□□□ 1.25
VPS53-216ENST00000574029 CYP11A1P05108 521 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 NFICP08651 508 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 PLCG1P19174 1290 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 ABCD1P33897 745 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 MCM6Q14566 821 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 ARMCX5Q6P1M9 558 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 C1orf228Q6PIY5 440 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 GAREM2Q75VX8 874 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 YAF2Q8IY57 180 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 TTC9BQ8N6N2 239 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 RAD54LQ92698 747 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 GTF3C3Q9Y5Q9 886 aa22.84■■□□□ 1.25
VPS53-216ENST00000574029 DNAH14Q0VDD8 3507 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 FGF19O95750 216 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 TGM1P22735 817 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 KARSQ15046 597 aaKnown RBP22.83■■□□□ 1.25
VPS53-216ENST00000574029 ARID3BQ8IVW6 561 aaPredicted RBP22.83■■□□□ 1.25
VPS53-216ENST00000574029 OR10T2Q8NGX3 314 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 ASB7Q9H672 318 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 C8orf33Q9H7E9 229 aaPredicted RBP22.83■■□□□ 1.25
VPS53-216ENST00000574029 F5P12259 2224 aa22.83■■□□□ 1.25
VPS53-216ENST00000574029 GPR179Q6PRD1 2367 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 ANKRD63C9JTQ0 380 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 SOAT2O75908 522 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 BMP15O95972 392 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 KRT18P05783 430 aaKnown RBP22.82■■□□□ 1.24
VPS53-216ENST00000574029 SDHBP21912 280 aa22.82■■□□□ 1.24
VPS53-216ENST00000574029 NMT1P30419 496 aaKnown RBP22.82■■□□□ 1.24
VPS53-216ENST00000574029 LONP1P36776 959 aaKnown RBP22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms