RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 FAM193BQ96PV7 902 aaPredicted RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 PKMYT1Q99640 499 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 MRPL45Q9BRJ2 306 aaKnown RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 COLEC11Q9BWP8 271 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 VPS16Q9H269 839 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PRDM12Q9H4Q4 367 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 SMYD3Q9H7B4 428 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 RAB20Q9NX57 234 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 HMGXB4Q9UGU5 601 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 RWDD3Q9Y3V2 267 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PCDHB12Q9Y5F1 795 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 TIMM13Q9Y5L4 95 aaPredicted RBP9.99□□□□□ -0.81
VPS35-211ENST00000569950 IRAK3Q9Y616 596 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 NOTCH4Q99466 2003 aa9.99□□□□□ -0.81
VPS35-211ENST00000569950 PATJQ8NI35 1801 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 UNC80Q8N2C7 3258 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 SMTNL1A8MU46 457 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 HIDE1A8MVS5 230 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 OAZ2O95190 189 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 KRT19P08727 400 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 CTSAP10619 480 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 ACO1P21399 889 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 ATICP31939 592 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 PNPLA4P41247 253 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 MTIF2P46199 727 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 CDH8P55286 799 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 NOP14P78316 857 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 FANCCQ00597 558 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 UBE3AQ05086 875 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 NR1I3Q14994 352 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 TPD52L1Q16890 204 aaPredicted RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 SPOUT1Q5T280 376 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 FAM171A1Q5VUB5 890 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 WSCD1Q658N2 575 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 GJB7Q6PEY0 223 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 TRIM65Q6PJ69 517 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 PRSS55Q6UWB4 352 aaPredicted RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 ADGRD2Q7Z7M1 963 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 GPR65Q8IYL9 337 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 VPS52Q8N1B4 723 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 PDCL2Q8N4E4 241 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 EHBP1Q8NDI1 1231 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 OR10T2Q8NGX3 314 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 WHAMMQ8TF30 809 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 PIK3R5Q8WYR1 880 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 TAF4BQ92750 862 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 TMEM169Q96HH4 297 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 CRACR2AQ9BSW2 395 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 C11orf84Q9BUA3 381 aaPredicted RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 NAA15Q9BXJ9 866 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 INTS2Q9H0H0 1204 aaKnown RBP9.98□□□□□ -0.81
VPS35-211ENST00000569950 GANQ9H2C0 597 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 RXFP1Q9HBX9 757 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS35-211ENST00000569950 AAASQ9NRG9 546 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 PCDHB8Q9UN66 801 aa9.98□□□□□ -0.81
VPS35-211ENST00000569950 SF3B1O75533 1304 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS35-211ENST00000569950 C2orf16Q68DN1 1984 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 C2orf71A6NGG8 1288 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 SYN3O14994 580 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 STX10O60499 249 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TACC1O75410 805 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TADA2AO75478 443 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 PRKCSHP14314 528 aaPredicted RBP9.97□□□□□ -0.81
VPS35-211ENST00000569950 TYMPP19971 482 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 LMO2P25791 158 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 PIK3CAP42336 1068 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 RAP1GAPP47736 663 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 INCA1Q0VD86 236 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 KCNC3Q14003 757 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 SGSM1Q2NKQ1 1148 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 ZNF699Q32M78 642 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 WDR72Q3MJ13 1102 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 SV2CQ496J9 727 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 VARS2Q5ST30 1063 aaKnown RBP9.97□□□□□ -0.81
VPS35-211ENST00000569950 USP37Q86T82 979 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TOP6BLQ8N6T0 577 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 VN1R2Q8NFZ6 395 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 FEZF2Q8TBJ5 459 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 ZNF560Q96MR9 790 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 ERGIC2Q96RQ1 377 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TWNKQ96RR1 684 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TMEM209Q96SK2 561 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 LPIN3Q9BQK8 851 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 CLSTN3Q9BQT9 956 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 TTYH3Q9C0H2 523 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 GPR88Q9GZN0 384 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 GCNT4Q9P109 453 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 MTRRQ9UBK8 725 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 SNX9Q9Y5X1 595 aa9.97□□□□□ -0.81
VPS35-211ENST00000569950 ZNF638Q14966 1978 aaKnown RBP9.96□□□□□ -0.81
VPS35-211ENST00000569950 FSD2A1L4K1 749 aa9.96□□□□□ -0.82
VPS35-211ENST00000569950 CARNS1A5YM72 827 aa9.96□□□□□ -0.82
VPS35-211ENST00000569950 BECN2A8MW95 431 aa9.96□□□□□ -0.82
VPS35-211ENST00000569950 RNF225M0QZC1 329 aaPredicted RBP9.96□□□□□ -0.82
VPS35-211ENST00000569950 CYB561D2O14569 222 aa9.96□□□□□ -0.82
VPS35-211ENST00000569950 N4BP1O75113 896 aaKnown RBP9.96□□□□□ -0.82
VPS35-211ENST00000569950 CNPP09543 421 aaKnown RBP9.96□□□□□ -0.82
VPS35-211ENST00000569950 WEE2P0C1S8 567 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms