RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 GRSF1Q12849 480 aaKnown RBP eCLIP12.91□□□□□ -0.34
CLK3-222ENST00000568232 GPR158Q5T848 1215 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 NAIF1Q69YI7 327 aaPredicted RBP12.91□□□□□ -0.34
CLK3-222ENST00000568232 PPP4R3AQ6IN85 833 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 GAREM2Q75VX8 874 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 KRT25Q7Z3Z0 450 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 ZBTB8OSQ8IWT0 167 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 DAGLBQ8NCG7 672 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 BPIFB1Q8TDL5 484 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 CCDC43Q96MW1 224 aaKnown RBP12.91□□□□□ -0.34
CLK3-222ENST00000568232 PGLYRP2Q96PD5 576 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 SMG9Q9H0W8 520 aaKnown RBP12.91□□□□□ -0.34
CLK3-222ENST00000568232 ATXN3LQ9H3M9 355 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 KCNJ14Q9UNX9 436 aa12.91□□□□□ -0.34
CLK3-222ENST00000568232 ACKR2O00590 384 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 SNPHO15079 494 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 LYPLA2O95372 231 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 U2AF2P26368 475 aaKnown RBP eCLIP12.9□□□□□ -0.34
CLK3-222ENST00000568232 OSTNP61366 133 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 SIM1P81133 766 aaPredicted RBP12.9□□□□□ -0.34
CLK3-222ENST00000568232 MAPK6Q16659 721 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 TRIM68Q6AZZ1 485 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 ZNF280DQ6N043 979 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 NEK8Q86SG6 692 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 TMEM130Q8N3G9 435 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 CHCHD4Q8N4Q1 142 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 CEP120Q8N960 986 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 ZMAT2Q96NC0 199 aaKnown RBP12.9□□□□□ -0.34
CLK3-222ENST00000568232 CCDC113Q9H0I3 377 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 GKN1Q9NS71 199 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 SLC27A5Q9Y2P5 690 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 NUB1Q9Y5A7 615 aa12.9□□□□□ -0.34
CLK3-222ENST00000568232 TRDMT1O14717 391 aaKnown RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 SOAT2O75908 522 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 HMGB1P09429 215 aaKnown RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 BCKDHBP21953 392 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 PDIA3P30101 505 aaKnown RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 MAPK8P45983 427 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 GALK1P51570 392 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 DGKEP52429 567 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 FAM193AP78312 1265 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 CYP4F8P98187 520 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 SSRP1Q08945 709 aaKnown RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 DUSP4Q13115 394 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 KRT32Q14532 448 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 KARSQ15046 597 aaKnown RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 DCAF4L1Q3SXM0 396 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 NT5DC1Q5TFE4 455 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 PMS2CLQ68D20 193 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 ALKAL1Q6UXT8 129 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 TMEM92Q6UXU6 159 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 CYP2U1Q7Z449 544 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 RPLP0P6Q8NHW5 317 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 DDX12PQ92771 950 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 C18orf25Q96B23 403 aaPredicted RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 POLR3CQ9BUI4 534 aaPredicted RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 KIFC3Q9BVG8 833 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 TPSD1Q9BZJ3 242 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 EBF3Q9H4W6 596 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 POLD4Q9HCU8 107 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 HPS4Q9NQG7 708 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 OBP2AQ9NY56 170 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 EBF1Q9UH73 591 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 MAFFQ9ULX9 164 aa12.89□□□□□ -0.35
CLK3-222ENST00000568232 KIF26AQ9ULI4 1882 aaPredicted RBP12.89□□□□□ -0.35
CLK3-222ENST00000568232 HELZ2Q9BYK8 2649 aaKnown RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 CCDC194A0A1B0GVG4 234 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 APBB3O95704 486 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 GCFC2P16383 781 aaKnown RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 ATP2B1P20020 1258 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 GABRR2P28476 465 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 DHPSP49366 369 aaPredicted RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 EPHB3P54753 998 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 PLCB2Q00722 1185 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 SCAPQ12770 1279 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 RUNX3Q13761 415 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 DMC1Q14565 340 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 EARS2Q5JPH6 523 aaKnown RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 PIK3AP1Q6ZUJ8 805 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 DNAJB7Q7Z6W7 309 aaPredicted RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 TRIM22Q8IYM9 498 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 BEST2Q8NFU1 509 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 OXER1Q8TDS5 423 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 HNRNPLLQ8WVV9 542 aaKnown RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 PIGKQ92643 395 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 EZH1Q92800 747 aaPredicted RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 MARVELD3Q96A59 401 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 SUSD3Q96L08 255 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 JAKMIP1Q96N16 626 aaKnown RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 TBC1D32Q96NH3 1257 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 FAM83CQ9BQN1 747 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 C2orf40Q9H1Z8 148 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 SLC32A1Q9H598 525 aa12.88□□□□□ -0.35
CLK3-222ENST00000568232 TIMM13Q9Y5L4 95 aaPredicted RBP12.88□□□□□ -0.35
CLK3-222ENST00000568232 FAM221BA6H8Z2 402 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 FAM205CA6NFA0 338 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 BAG4O95429 457 aaKnown RBP12.87□□□□□ -0.35
CLK3-222ENST00000568232 MCM4P33991 863 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 ALDH1A3P47895 512 aa12.87□□□□□ -0.35
CLK3-222ENST00000568232 MCM2P49736 904 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms