RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 MICAL2O94851 1124 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 PIGRP01833 764 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 NFICP08651 508 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 MRPL58Q14197 206 aaKnown RBP20.63■□□□□ 0.89
VPS35-202ENST00000561713 LPAL2Q16609 132 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 VITQ6UXI7 678 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 DYMQ7RTS9 669 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 SFR1Q86XK3 245 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 MAP4K3Q8IVH8 894 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 HS6ST3Q8IZP7 471 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 PGLYRP2Q96PD5 576 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 CHRDQ9H2X0 955 aa20.63■□□□□ 0.89
VPS35-202ENST00000561713 ZNF334Q9HCZ1 680 aaPredicted RBP20.63■□□□□ 0.89
VPS35-202ENST00000561713 DAXXQ9UER7 740 aaPredicted RBP20.63■□□□□ 0.89
VPS35-202ENST00000561713 FBXO2Q9UK22 296 aaPredicted RBP20.63■□□□□ 0.89
VPS35-202ENST00000561713 UBQLN1Q9UMX0 589 aaKnown RBP20.63■□□□□ 0.89
VPS35-202ENST00000561713 CACNA1BQ00975 2339 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 ANKRD63C9JTQ0 380 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 ZNF197O14709 1029 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 KRT37O76014 449 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 LRPAP1P30533 357 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 GDI1P31150 447 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 VIPR2P41587 438 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 CDR1P51861 262 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 CYP4A22Q5TCH4 519 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 JADE1Q6IE81 842 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 RNF19BQ6ZMZ0 732 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 FAM3CQ92520 227 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 SMARCD2Q92925 531 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 IRF7Q92985 503 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 RPF1Q9H9Y2 349 aaKnown RBP20.62■□□□□ 0.89
VPS35-202ENST00000561713 LMAN1LQ9HAT1 526 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 CEP72Q9P209 647 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 KCNG1Q9UIX4 513 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 GMEB2Q9UKD1 530 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 F5P12259 2224 aa20.62■□□□□ 0.89
VPS35-202ENST00000561713 TPRP12270 2363 aaKnown RBP20.61■□□□□ 0.89
VPS35-202ENST00000561713 NUP210Q8TEM1 1887 aaPredicted RBP20.61■□□□□ 0.89
VPS35-202ENST00000561713 A0A0B4J269 797 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 MOSPD3O75425 235 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 VNN2O95498 520 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 GJA1P17302 382 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 PSMC3P17980 439 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 NRLP54845 237 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 TWF1Q12792 350 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 ZBTB6Q15916 424 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 TPGS2Q68CL5 300 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 MAMSTRQ6ZN01 415 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 APPL2Q8NEU8 664 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 CCSER1Q9C0I3 900 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 PLEKHA5Q9HAU0 1116 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 YIPF1Q9Y548 306 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 PIAS3Q9Y6X2 628 aa20.61■□□□□ 0.89
VPS35-202ENST00000561713 NCANO14594 1321 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 ACACBO00763 2458 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 M0QZQ0 153 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 SYT1P21579 422 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 AARSP49588 968 aaKnown RBP eCLIP20.6■□□□□ 0.89
VPS35-202ENST00000561713 ACOT2P49753 483 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 YWHAHQ04917 246 aaPredicted RBP20.6■□□□□ 0.89
VPS35-202ENST00000561713 SPEM2Q0P670 501 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 IQCEQ6IPM2 695 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 DSTYKQ6XUX3 929 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 ELMOD1Q8N336 334 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 KCNN1Q92952 543 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 ZNF512Q96ME7 567 aaPredicted RBP20.6■□□□□ 0.89
VPS35-202ENST00000561713 CRISPLD1Q9H336 500 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 TRPV5Q9NQA5 729 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 TBC1D7Q9P0N9 293 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 AFF4Q9UHB7 1163 aaKnown RBP20.6■□□□□ 0.89
VPS35-202ENST00000561713 CPSF3Q9UKF6 684 aaKnown RBP20.6■□□□□ 0.89
VPS35-202ENST00000561713 OBSL1O75147 1896 aa20.6■□□□□ 0.89
VPS35-202ENST00000561713 KIF26AQ9ULI4 1882 aaPredicted RBP20.6■□□□□ 0.89
VPS35-202ENST00000561713 MYL4P12829 197 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 PDCP20941 246 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 GTF2BQ00403 316 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 TTC9BQ8N6N2 239 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 ZSCAN18Q8TBC5 510 aaPredicted RBP20.59■□□□□ 0.89
VPS35-202ENST00000561713 TMEM209Q96SK2 561 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 RTKNQ9BST9 563 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 RAB23Q9ULC3 237 aa20.59■□□□□ 0.89
VPS35-202ENST00000561713 MYMKA6NI61 221 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 ZNF263O14978 683 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 CYP3A5P20815 502 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 CCNE1P24864 410 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 CCR3P51677 355 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 SATB1Q01826 763 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 GAS6Q14393 721 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 PPP2R5DQ14738 602 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 TMEM132DQ14C87 1099 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 TEAD2Q15562 447 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 ADALQ6DHV7 355 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 LAIR1Q6GTX8 287 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 CELF5Q8N6W0 485 aaKnown RBP20.58■□□□□ 0.89
VPS35-202ENST00000561713 KRI1Q8N9T8 703 aaKnown RBP20.58■□□□□ 0.89
VPS35-202ENST00000561713 FAM84AQ96KN4 292 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 USP28Q96RU2 1077 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 TRPV4Q9HBA0 871 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 MTMR6Q9Y217 621 aa20.58■□□□□ 0.89
VPS35-202ENST00000561713 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms