RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 KBTBD4Q9NVX7 518 aa11.14□□□□□ -0.63
CLK3-205ENST00000561673 DOCK6Q96HP0 2047 aa11.14□□□□□ -0.63
CLK3-205ENST00000561673 CFAP54Q96N23 3096 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.13□□□□□ -0.63
CLK3-205ENST00000561673 TULP1O00294 542 aaPredicted RBP11.13□□□□□ -0.63
CLK3-205ENST00000561673 CYB561D2O14569 222 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ZNF197O14709 1029 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 MICAL2O94851 1124 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PRPF6O94906 941 aaKnown RBP11.13□□□□□ -0.63
CLK3-205ENST00000561673 IL18RAPO95256 599 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 YEATS4O95619 227 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 CYP11A1P05108 521 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 HSP90AA1P07900 732 aaKnown RBP11.13□□□□□ -0.63
CLK3-205ENST00000561673 ODC1P11926 461 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PAX3P23760 479 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 WNT7BP56706 349 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 DUSP4Q13115 394 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 MYBPC2Q14324 1141 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 E2F4Q16254 413 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 CYP4A22Q5TCH4 519 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 TANGO2Q6ICL3 276 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 IQCEQ6IPM2 695 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PHLDB3Q6NSJ2 640 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 SHC4Q6S5L8 630 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PDZD4Q76G19 769 aaPredicted RBP11.13□□□□□ -0.63
CLK3-205ENST00000561673 CCDC65Q8IXS2 484 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 SYCP3Q8IZU3 236 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ELMOD1Q8N336 334 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 DTWD2Q8NBA8 298 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ATAD1Q8NBU5 361 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 HPS3Q969F9 1004 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 SAAL1Q96ER3 474 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 BORCS6Q96GS4 357 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ZSWIM3Q96MP5 696 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PLA2G2FQ9BZM2 168 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 TNMDQ9H2S6 317 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 ARHGEF3Q9NR81 526 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 SLC27A5Q9Y2P5 690 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 FRYLO94915 3013 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 NOTCH4Q99466 2003 aa11.13□□□□□ -0.63
CLK3-205ENST00000561673 PDCD11Q14690 1871 aaKnown RBP11.12□□□□□ -0.63
CLK3-205ENST00000561673 GOLGA8IPA6NC78 632 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 GOLGA8JA6NMD2 632 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 CUTAO60888 179 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 MOSPD3O75425 235 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 ECI2O75521 394 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 F13A1P00488 732 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 DCNP07585 359 aaKnown RBP11.12□□□□□ -0.63
CLK3-205ENST00000561673 PDIA4P13667 645 aaKnown RBP11.12□□□□□ -0.63
CLK3-205ENST00000561673 GARTP22102 1010 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 RFX1P22670 979 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 TAF6P49848 677 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 EPHA5P54756 1037 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 SNW1Q13573 536 aaKnown RBP11.12□□□□□ -0.63
CLK3-205ENST00000561673 ALCAMQ13740 583 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 PKP1Q13835 747 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 SLC44A4Q53GD3 710 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 FAM78AQ5JUQ0 283 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 SCARA3Q6AZY7 606 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 CENPPQ6IPU0 288 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 ARMCX5Q6P1M9 558 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 CCDC105Q8IYK2 499 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 IQUBQ8NA54 791 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 GLIS3Q8NEA6 775 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 OR10T2Q8NGX3 314 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 ELSPBP1Q96BH3 223 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 DHX58Q96C10 678 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 PYM1Q9BRP8 204 aaKnown RBP11.12□□□□□ -0.63
CLK3-205ENST00000561673 CBWD1Q9BRT8 395 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 TRIM9Q9C026 710 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 LRRC27Q9C0I9 530 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 CUEDC2Q9H467 287 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 PCIF1Q9H4Z3 704 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 TMEM206Q9H813 350 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 DSEQ9UL01 958 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 SIT1Q9Y3P8 196 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 YIPF1Q9Y548 306 aa11.12□□□□□ -0.63
CLK3-205ENST00000561673 MTMR11A4FU01 709 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 KPNA7A9QM74 516 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 POLR2DO15514 142 aaKnown RBP11.11□□□□□ -0.63
CLK3-205ENST00000561673 EXTL3O43909 919 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 SOAT2O75908 522 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 LDHAP00338 332 aaKnown RBP11.11□□□□□ -0.63
CLK3-205ENST00000561673 MYL4P12829 197 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 GJA1P17302 382 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 FCARP24071 287 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 HOXD13P35453 343 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 ALDH1A3P47895 512 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 CDR1P51861 262 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 EPHB3P54753 998 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 STARD6P59095 220 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 TFAMQ00059 246 aaKnown RBP11.11□□□□□ -0.63
CLK3-205ENST00000561673 AMPD3Q01432 767 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 SLC39A12Q504Y0 691 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 WSCD1Q658N2 575 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 CNNM4Q6P4Q7 775 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 METTL23Q86XA0 190 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 NT5DC4Q86YG4 428 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 BRSK2Q8IWQ3 736 aa11.11□□□□□ -0.63
CLK3-205ENST00000561673 TTC9BQ8N6N2 239 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms