RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 SLC16A3O15427 465 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 HCRTO43612 131 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PALMO75781 387 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 IL18RAPO95256 599 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MUTP22033 750 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 BDNFP23560 247 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 EDNRBP24530 442 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TBXAS1P24557 533 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ADSSP30520 456 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 YWHAHQ04917 246 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 HSP90B2PQ58FF3 399 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 DCAF6Q58WW2 860 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TDRD10Q5VZ19 366 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 FBXO46Q6PJ61 603 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ZPBP2Q6X784 338 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 C4orf50Q6ZRC1 276 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KDELC2Q7Z4H8 507 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 FAM228AQ86W67 206 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 RFX6Q8HWS3 928 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TC2NQ8N9U0 490 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ARNTL2Q8WYA1 636 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CCDC51Q96ER9 411 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SENP8Q96LD8 212 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MCEEQ96PE7 176 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 AGPAT1Q99943 283 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SPON2Q9BUD6 331 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MCOLN1Q9GZU1 580 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SLC38A7Q9NVC3 462 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TRAF3IP3Q9Y228 551 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PCDHA2Q9Y5H9 948 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SLC4A7Q9Y6M7 1214 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 LAMB2P55268 1798 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KPNA7A9QM74 516 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 E7EVH7 732 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 H7C0C1 242 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KIF2AO00139 706 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PPEF2O14830 753 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KRT1P04264 644 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 URODP06132 367 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MCF2P10911 925 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SCP2P22307 547 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ARL2P36404 184 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ATP5OP48047 213 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 GALCP54803 685 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MBTD1Q05BQ5 628 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 IFFO1Q0D2I5 559 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 UAP1Q16222 522 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SV2CQ496J9 727 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SLC39A12Q504Y0 691 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KCNT1Q5JUK3 1230 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 FAM182AQ5T1J6 154 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 DAB2IPQ5VWQ8 1189 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CASC4Q6P4E1 433 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 B4GALNT4Q76KP1 1039 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SND1Q7KZF4 910 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SLC2A14Q8TDB8 520 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SEMA4DQ92854 862 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 RNPC3Q96LT9 517 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 BPIFA3Q9BQP9 254 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 HTATIP2Q9BUP3 242 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 NIFKQ9BYG3 293 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KCTD10Q9H3F6 313 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PDZD7Q9H5P4 517 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TNFSF13BQ9Y275 285 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 F5P12259 2224 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SMIM28A0A1B0GU29 152 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MOXD2PA6NHM9 499 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PRPSAP2O60256 369 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SOAT2O75908 522 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CKBP12277 381 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PDGFRAP16234 1089 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KLRC2P26717 231 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CLCNKBP51801 687 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SNX16P57768 344 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SF3A3Q12874 501 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CLUL1Q15846 466 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 NOMO2Q5JPE7 1267 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 PLPP4Q5VZY2 271 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 BTBD8Q5XKL5 378 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 SARM1Q6SZW1 724 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF365Q70YC5 407 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CACUL1Q86Y37 369 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 IRF2BP1Q8IU81 584 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 FMNL3Q8IVF7 1028 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ATAD1Q8NBU5 361 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KAT2BQ92831 832 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 MKNK1Q9BUB5 465 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 COLEC11Q9BWP8 271 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 TSGA10Q9BZW7 698 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 DHX35Q9H5Z1 703 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 KRT82Q9NSB4 513 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CGNQ9P2M7 1197 aaKnown RBP5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ARHGAP28Q9P2N2 729 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 ZNF148Q9UQR1 794 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 CENPFP49454 3210 aa5.78□□□□□ -1.48
VPS13C-209ENST00000560637 A0A0U1RQJ8 604 aa5.77□□□□□ -1.49
VPS13C-209ENST00000560637 RNF225M0QZC1 329 aaPredicted RBP5.77□□□□□ -1.49
VPS13C-209ENST00000560637 KRIT1O00522 736 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms