RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 MYO5CQ9NQX4 1742 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 SNAP23O00161 211 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CSPG5O95196 566 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 VCAM1P19320 739 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 VHLP40337 213 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 TMED10P49755 219 aaKnown RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 PTK6Q13882 451 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 RAD9BQ6WBX8 426 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 SPATA2LQ8IUW3 424 aaPredicted RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 OTULINQ96BN8 352 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZIM3Q96PE6 472 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 SNX9Q9Y5X1 595 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 FAM196BA6NMK8 535 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZNF263O14978 683 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 SERPINB3P29508 390 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZNF543Q08ER8 600 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 STK4Q13043 487 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 COL23A1Q86Y22 540 aaPredicted RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CYGBQ8WWM9 190 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 ELMO2Q96JJ3 720 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CNBD2Q96M20 576 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 MANSC1Q9H8J5 431 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 STMN3Q9NZ72 180 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 PDS5AQ29RF7 1337 aaKnown RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CFAP99D6REC4 459 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 MAGEB2O15479 319 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CLASP2O75122 1294 aaKnown RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 SERPINB1P30740 379 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 FNTAP49354 379 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 KCNK10P57789 538 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 ADRM1Q16186 407 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CPA5Q8WXQ8 436 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 FAM84BQ96KN1 310 aaPredicted RBP13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 KCNF1Q9H3M0 494 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 CHMP2BQ9UQN3 213 aa13.81□□□□□ -0.2
CSPG4P11-201ENST00000560634 TRPC5OSA6NMA1 111 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 COMTP21964 271 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 LVRNQ6Q4G3 990 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 SUGP1Q8IWZ8 645 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 SPATA18Q8TC71 538 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 LSM7Q9UK45 103 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 IL18RAPO95256 599 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 ARIH2O95376 493 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 CD4P01730 458 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 RALBP11234 206 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 PSMA3P25788 255 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 STIP1P31948 543 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 NUP107P57740 925 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 LRRC74AQ0VAA2 488 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 PTGISQ16647 500 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 TKFCQ3LXA3 575 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 MDH1BQ5I0G3 518 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 ERGIC2Q96RQ1 377 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 REEP2Q9BRK0 252 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 MTMR4Q9NYA4 1195 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 NPHP4O75161 1426 aaPredicted RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 TMEM132DQ14C87 1099 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 LMBRD2Q68DH5 695 aaPredicted RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 NAPEPLDQ6IQ20 393 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 PPIL6Q8IXY8 311 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 LPAR1Q92633 364 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 TMEM8AQ9HCN3 771 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 EXOSC4Q9NPD3 245 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 ABT1Q9ULW3 272 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 VPS9D1Q9Y2B5 631 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 CAB39Q9Y376 341 aaPredicted RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 PKP3Q9Y446 797 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZC3H4Q9UPT8 1303 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 USP42Q9H9J4 1324 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 EEF2KO00418 725 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 TNPO2O14787 897 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 RXRBP28702 533 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 GUCY1A2P33402 732 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 KPNB1Q14974 876 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 SMAD1Q15797 465 aaKnown RBP13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 SYTL3Q4VX76 610 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 DDI1Q8WTU0 396 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 SEPT1Q8WYJ6 367 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 HIC2Q96JB3 615 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 MCEEQ96PE7 176 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 PIDD1Q9HB75 910 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 APPL1Q9UKG1 709 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 FHOD1Q9Y613 1164 aa13.8□□□□□ -0.2
CSPG4P11-201ENST00000560634 RFC5P40937 340 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 BOLA3Q53S33 107 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 STOX1Q6ZVD7 989 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 NT5C1AQ9BXI3 368 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 GOLPH3Q9H4A6 298 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 CFAP65Q6ZU64 1925 aaKnown RBP13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 MYO1GB0I1T2 1018 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 ALBP02768 609 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 HOXD10P28358 340 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 ITGA8P53708 1063 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 AARS2Q5JTZ9 985 aaKnown RBP13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 MFSD14CQ5VZR4 134 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 BARGINQ6ZT62 677 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 TTC30BQ8N4P2 665 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 ZFYVE19Q96K21 471 aa13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 FRMD8P1Q9BZ68 369 aaPredicted RBP13.79□□□□□ -0.2
CSPG4P11-201ENST00000560634 CATSPERBQ9H7T0 1116 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms