RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 CLEC1BQ9P126 229 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 ARMCX3Q9UH62 379 aaPredicted RBP13.99□□□□□ -0.17
NEDD8-208ENST00000560427 CDY1Q9Y6F8 540 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 VWA8A3KMH1 1905 aa13.99□□□□□ -0.17
NEDD8-208ENST00000560427 CYB561D2O14569 222 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 PAPLNO95428 1278 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 C4BPAP04003 597 aaKnown RBP13.98□□□□□ -0.17
NEDD8-208ENST00000560427 FAM163BP0C2L3 166 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 DLG4P78352 724 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 SMAD4Q13485 552 aaKnown RBP13.98□□□□□ -0.17
NEDD8-208ENST00000560427 TDRD10Q5VZ19 366 aaKnown RBP13.98□□□□□ -0.17
NEDD8-208ENST00000560427 LLGL2Q6P1M3 1020 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 LILRA6Q6PI73 481 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 CYP26C1Q6V0L0 522 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 C15orf39Q6ZRI6 1047 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 EP400NLQ6ZTU2 488 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 SV2AQ7L0J3 742 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 FRMD5Q7Z6J6 570 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 TMEM130Q8N3G9 435 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 SMRP1Q8NCR6 262 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 CMASQ8NFW8 434 aaPredicted RBP13.98□□□□□ -0.17
NEDD8-208ENST00000560427 ZNF516Q92618 1163 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 TAF4BQ92750 862 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 RHOBTB2Q9BYZ6 727 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 SFXN1Q9H9B4 322 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 TMEM8AQ9HCN3 771 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 PRDM6Q9NQX0 595 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 ZDHHC7Q9NXF8 308 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 CD207Q9UJ71 328 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 FBXL5Q9UKA1 691 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 FBXW11Q9UKB1 542 aa13.98□□□□□ -0.17
NEDD8-208ENST00000560427 BARX2Q9UMQ3 279 aaPredicted RBP13.98□□□□□ -0.17
NEDD8-208ENST00000560427 TSC2P49815 1807 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 TGM5O43548 720 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 EPCAMP16422 314 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 RPL17P18621 184 aaKnown RBP13.97□□□□□ -0.17
NEDD8-208ENST00000560427 OR1D2P34982 312 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 MARSP56192 900 aaKnown RBP13.97□□□□□ -0.17
NEDD8-208ENST00000560427 ROR1Q01973 937 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 ITIH3Q06033 890 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 NCOA4Q13772 614 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 KLHL40Q2TBA0 621 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 DPCR1Q3MIW9 517 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 C1orf220Q5T0J3 134 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 LIN9Q5TKA1 542 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 TPGS2Q68CL5 300 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 KRT39Q6A163 491 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 SASS6Q6UVJ0 657 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 LIMS2Q7Z4I7 341 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 THEM5Q8N1Q8 247 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 ZNF461Q8TAF7 563 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 FAM84AQ96KN4 292 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 IMPG2Q9BZV3 1241 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 XYLT2Q9H1B5 865 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 MAN1C1Q9NR34 630 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 SNX9Q9Y5X1 595 aa13.97□□□□□ -0.17
NEDD8-208ENST00000560427 H3BQ06 376 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 ABLIM3O94929 683 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 CST3P01034 146 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 POU2F2P09086 479 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 TRIM49P0CI25 452 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 TRIM49CP0CI26 452 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 CCDC192P0DO97 292 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 P4HA1P13674 534 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 HOXA9P31269 272 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 PIK3CAP42336 1068 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 LHX1P48742 406 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 MXI1P50539 228 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 STX17P56962 302 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 TNNC1P63316 161 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 RBM10P98175 930 aaKnown RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 DLX2Q07687 328 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 PPP3CAQ08209 521 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 SMARCB1Q12824 385 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 SGSM1Q2NKQ1 1148 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 UVSSAQ2YD98 709 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 ZNF699Q32M78 642 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 CCDC40Q4G0X9 1142 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 SYCE2Q6PIF2 218 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 RSPO2Q6UXX9 243 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 CCDC149Q6ZUS6 474 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 PALB2Q86YC2 1186 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 PDCL2Q8N4E4 241 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 KREMEN2Q8NCW0 462 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 CCDC150Q8NCX0 1101 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 SLC35C1Q96A29 364 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 EEF2KMTQ96G04 330 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 FAXDC2Q96IV6 333 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 ASB2Q96Q27 587 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 ANO10Q9NW15 660 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 AFF4Q9UHB7 1163 aaKnown RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 L1RE1Q9UN81 338 aa13.96□□□□□ -0.17
NEDD8-208ENST00000560427 TIMM13Q9Y5L4 95 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-208ENST00000560427 SCN1AP35498 2009 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 BRWD1Q9NSI6 2320 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 WDR27A2RRH5 827 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 SPDYE4A6NLX3 237 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 PMM2O15305 246 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 ADAM12O43184 909 aa13.95□□□□□ -0.18
NEDD8-208ENST00000560427 N4BP1O75113 896 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms