RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FAM170AA1A519 330 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 KCNK3O14649 394 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 CILPO75339 1184 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 RPS6KA5O75582 802 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 CDH5P33151 784 aaPredicted RBP13.52□□□□□ -0.25
USP3-213ENST00000559711 ACLYP53396 1101 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 RAD23BP54727 409 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 RBM10P98175 930 aaKnown RBP13.52□□□□□ -0.25
USP3-213ENST00000559711 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
USP3-213ENST00000559711 INCA1Q0VD86 236 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 MYO1EQ12965 1108 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 PTP4A2Q12974 167 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 PTK7Q13308 1070 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 ITGA7Q13683 1181 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 ZNF394Q53GI3 561 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 CCDC181Q5TID7 509 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 LHX8Q68G74 356 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 LRRC52Q8N7C0 313 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 MSANTD4Q8NCY6 345 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 SPATA4Q8NEY3 305 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 ZNF564Q8TBZ8 553 aaPredicted RBP13.52□□□□□ -0.25
USP3-213ENST00000559711 TFAP2BQ92481 460 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 ZNF518BQ9C0D4 1074 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 EPC1Q9H2F5 836 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 ANKZF1Q9H8Y5 726 aa13.52□□□□□ -0.25
USP3-213ENST00000559711 UBQLN1Q9UMX0 589 aaKnown RBP13.52□□□□□ -0.25
USP3-213ENST00000559711 ANK1P16157 1881 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 MOXD2PA6NHM9 499 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 DDX3YO15523 660 aaKnown RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 ATMINO43313 823 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 CD4P01730 458 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 MYCNP04198 464 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 INHAP05111 366 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 CYP3A5P20815 502 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 BRD2P25440 801 aaKnown RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 RAP1GAPP47736 663 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 TWF2Q6IBS0 349 aaKnown RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 FBXO38Q6PIJ6 1188 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 MMGT1Q8N4V1 131 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 SLC4A11Q8NBS3 891 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 ZNF296Q8WUU4 475 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 C18orf25Q96B23 403 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 MS4A14Q96JA4 679 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 SELENOOQ9BVL4 669 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 PARD6BQ9BYG5 372 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 LHX5Q9H2C1 402 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 ADAM22Q9P0K1 906 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 TUBGCP4Q9UGJ1 667 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 PARP2Q9UGN5 583 aa13.51□□□□□ -0.25
USP3-213ENST00000559711 CHORDC1Q9UHD1 332 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 BARX2Q9UMQ3 279 aaPredicted RBP13.51□□□□□ -0.25
USP3-213ENST00000559711 MIF4GDA9UHW6 222 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 GPR182O15218 404 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 MED7O43513 233 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 XPOTO43592 962 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 CTSHP09668 335 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 MMP8P22894 467 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 RRM1P23921 792 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 THPOP40225 353 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 DNA2P51530 1060 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TNNC1P63316 161 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TRIM71Q2Q1W2 868 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 FAM26DQ5JW98 314 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 LIN9Q5TKA1 542 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 C9orf57Q5W0N0 161 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 PASD1Q8IV76 773 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 RASGEF1CQ8N431 466 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TMEM35BQ8NCS4 154 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 ARRDC4Q8NCT1 418 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 ACTRT1Q8TDG2 376 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TMEM176AQ96HP8 235 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 APOL6Q9BWW8 343 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 ELOVL4Q9GZR5 314 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 HMX1Q9NP08 348 aaPredicted RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 TTC7AQ9ULT0 858 aaPredicted RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 HTTP42858 3142 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 MYH10P35580 1976 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 PIRO00625 290 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 PPEF2O14830 753 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TLR3O15455 904 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 TUBBP07437 444 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 YY1P25490 414 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 GRK4P32298 578 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 GLRA4Q5JXX5 417 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 PLEKHA7Q6IQ23 1121 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 MTERF4Q7Z6M4 381 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 PDCL2Q8N4E4 241 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 WDTC1Q8N5D0 677 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 CD101Q93033 1021 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TWNKQ96RR1 684 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 AGO3Q9H9G7 860 aaKnown RBP13.5□□□□□ -0.25
USP3-213ENST00000559711 ERVK-5Q9HDB9 667 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 SMARCAL1Q9NZC9 954 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 EHD2Q9NZN4 543 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 KLK14Q9P0G3 267 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TMEM59LQ9UK28 342 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 RAB21Q9UL25 225 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 KIAA1257Q9ULG3 409 aa13.5□□□□□ -0.25
USP3-213ENST00000559711 TRIP12Q14669 1992 aaPredicted RBP13.49□□□□□ -0.25
USP3-213ENST00000559711 CAND2O75155 1236 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms