RNA–Protein interactions for RNA: ENST00000557644.5

NEDD1-213, Transcript of neural precursor cell expressed, developmentally down-regulated 1, humanhuman

TSL 1 (best) BASIC

Gene NEDD1, Length 2,367 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD1-213ENST00000557644 SMYD3Q9H7B4 428 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 CHST7Q9NS84 486 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 LZTS1Q9Y250 596 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 FGFR3P22607 806 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 RAP1GAPP47736 663 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 KLK7P49862 253 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 CDH8P55286 799 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 TNNC1P63316 161 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 UBXN1Q04323 297 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 KCNMA1Q12791 1236 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 ELAVL2Q12926 359 aaKnown RBP16.4■□□□□ 0.22
NEDD1-213ENST00000557644 USP41Q3LFD5 358 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 GBP6Q6ZN66 633 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 PDCL2Q8N4E4 241 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 ARID3AQ99856 593 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 TCF25Q9BQ70 676 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 TTPALQ9BTX7 342 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 HERC2P3Q9BVR0 1158 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 TLR9Q9NR96 1032 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 PCDHB8Q9UN66 801 aa16.4■□□□□ 0.22
NEDD1-213ENST00000557644 TMEM265A0A087WTH1 108 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 GTPBP10A4D1E9 387 aaKnown RBP16.39■□□□□ 0.21
NEDD1-213ENST00000557644 PON1P27169 355 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 ASPAP45381 313 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 WDR44Q5JSH3 913 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 KIAA1841Q6NSI8 718 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 TRIM65Q6PJ69 517 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 PRSS55Q6UWB4 352 aaPredicted RBP16.39■□□□□ 0.21
NEDD1-213ENST00000557644 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.39■□□□□ 0.21
NEDD1-213ENST00000557644 TMC7Q7Z402 723 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 TAF4BQ92750 862 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 RTN4Q9NQC3 1192 aaKnown RBP16.39■□□□□ 0.21
NEDD1-213ENST00000557644 VWA8A3KMH1 1905 aa16.39■□□□□ 0.21
NEDD1-213ENST00000557644 A0A1B0GTH6 734 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 HCRTO43612 131 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 HUS1O60921 280 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 ODC1P11926 461 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 UBE3AQ05086 875 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 VARS2Q5ST30 1063 aaKnown RBP16.38■□□□□ 0.21
NEDD1-213ENST00000557644 PLPP4Q5VZY2 271 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 ARHGEF19Q8IW93 802 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 CCDC150Q8NCX0 1101 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 APPL2Q8NEU8 664 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 RIN2Q8WYP3 895 aaPredicted RBP16.38■□□□□ 0.21
NEDD1-213ENST00000557644 SDCBP2Q9H190 292 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 ENTPD7Q9NQZ7 604 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 IFNKQ9P0W0 207 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 HIDE1A8MVS5 230 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 SYN3O14994 580 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 AP5Z1O43299 807 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 WEE2P0C1S8 567 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 CTSAP10619 480 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 RPL17P18621 184 aaKnown RBP16.38■□□□□ 0.21
NEDD1-213ENST00000557644 CA8P35219 290 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 GLUD2P49448 558 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 FXR1P51114 621 aaKnown RBP eCLIP16.38■□□□□ 0.21
NEDD1-213ENST00000557644 UBASH3AP57075 661 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 PLCB2Q00722 1185 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 DSG1Q02413 1049 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 FKBP15Q5T1M5 1219 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 KIAA0319Q5VV43 1072 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 PHLDB3Q6NSJ2 640 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 GJB7Q6PEY0 223 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 RRAGAQ7L523 313 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 LIMS2Q7Z4I7 341 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 MICAL1Q8TDZ2 1067 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 KBTBD7Q8WVZ9 684 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 KAT5Q92993 513 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 MRPL45Q9BRJ2 306 aaKnown RBP16.38■□□□□ 0.21
NEDD1-213ENST00000557644 NIF3L1Q9GZT8 377 aa16.38■□□□□ 0.21
NEDD1-213ENST00000557644 YWHAHQ04917 246 aaPredicted RBP16.37■□□□□ 0.21
NEDD1-213ENST00000557644 NR1I3Q14994 352 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 SYCP1Q15431 976 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 PTPN14Q15678 1187 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 DPY19L2P1Q6NXN4 242 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 ADGRF2Q8IZF7 708 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 TOP6BLQ8N6T0 577 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 LNX1Q8TBB1 728 aaPredicted RBP16.37■□□□□ 0.21
NEDD1-213ENST00000557644 SIX2Q9NPC8 291 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 CXCL14O95715 111 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 CYP11A1P05108 521 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 URODP06132 367 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 PAX3P23760 479 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 OVOS1Q6IE37 1185 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 RSPO2Q6UXX9 243 aaPredicted RBP16.37■□□□□ 0.21
NEDD1-213ENST00000557644 OSTM1Q86WC4 334 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 PPM1KQ8N3J5 372 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 NT5C1BQ96P26 610 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 MRPL17Q9NRX2 175 aaKnown RBP16.37■□□□□ 0.21
NEDD1-213ENST00000557644 SIK3Q9Y2K2 1263 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 NME7Q9Y5B8 376 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 XIRP2A4UGR9 3374 aa16.37■□□□□ 0.21
NEDD1-213ENST00000557644 COL4A4P53420 1690 aaPredicted RBP16.37■□□□□ 0.21
NEDD1-213ENST00000557644 FSCN2O14926 492 aa16.36■□□□□ 0.21
NEDD1-213ENST00000557644 LILRB3O75022 631 aa16.36■□□□□ 0.21
NEDD1-213ENST00000557644 TYMPP19971 482 aa16.36■□□□□ 0.21
NEDD1-213ENST00000557644 CDR1P51861 262 aa16.36■□□□□ 0.21
NEDD1-213ENST00000557644 MRPL58Q14197 206 aaKnown RBP16.36■□□□□ 0.21
NEDD1-213ENST00000557644 ADGRE1Q14246 886 aa16.36■□□□□ 0.21
NEDD1-213ENST00000557644 FILIP1LQ4L180 1135 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms