RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 VITQ6UXI7 678 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 MAP4K3Q8IVH8 894 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 KRI1Q8N9T8 703 aaKnown RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ZSCAN18Q8TBC5 510 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 CLDN23Q96B33 292 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 SENP8Q96LD8 212 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 FIZ1Q96SL8 496 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 HINFPQ9BQA5 517 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 CCSER1Q9C0I3 900 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 SLITRK6Q9H5Y7 841 aa12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF334Q9HCZ1 680 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 NUP210Q8TEM1 1887 aaPredicted RBP12.01□□□□□ -0.49
CCDC88C-213ENST00000557455 FRYLO94915 3013 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 EP300Q09472 2414 aaPredicted RBP12□□□□□ -0.49
CCDC88C-213ENST00000557455 VNN2O95498 520 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 NFICP08651 508 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 PDCP20941 246 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 VIPR2P41587 438 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 RPS9P46781 194 aaKnown RBP12□□□□□ -0.49
CCDC88C-213ENST00000557455 ACOT2P49753 483 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 FOXK2Q01167 660 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 MYBPC2Q14324 1141 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 C9orf57Q5W0N0 161 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 SLFN12LQ6IEE8 588 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 CENPPQ6IPU0 288 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 DYMQ7RTS9 669 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 SHKBP1Q8TBC3 707 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 DEPDC1BQ8WUY9 529 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 E2F7Q96AV8 911 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 BORCS6Q96GS4 357 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 EPSTI1Q96J88 318 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 CRISPLD1Q9H336 500 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 ST6GALNAC4Q9H4F1 302 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 ASB7Q9H672 318 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 TRPV4Q9HBA0 871 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 TRPV5Q9NQA5 729 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 CCDC39Q9UFE4 941 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 AGO2Q9UKV8 859 aaKnown RBP12□□□□□ -0.49
CCDC88C-213ENST00000557455 NDRG2Q9UN36 371 aaKnown RBP12□□□□□ -0.49
CCDC88C-213ENST00000557455 SLC27A5Q9Y2P5 690 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 DERAQ9Y315 318 aa12□□□□□ -0.49
CCDC88C-213ENST00000557455 DCHS1Q96JQ0 3298 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 A0A1W2PRU2 124 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 MTMR11A4FU01 709 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 HEPACAM2A8MVW5 462 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 TISP43B9A030 160 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 PIRO00625 290 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF263O14978 683 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 SPTLC1O15269 473 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF720Q7Z2F6 126 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 TMC8Q8IU68 726 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 MFSD6LQ8IWD5 586 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 YAF2Q8IY57 180 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 ATAD1Q8NBU5 361 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 ATRIPQ8WXE1 791 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 RUBCNQ92622 972 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 TMEM209Q96SK2 561 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 LRRC3Q9BY71 257 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 DNAJC25Q9H1X3 360 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 STK17AQ9UEE5 414 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 DSEQ9UL01 958 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 C2CD2Q9Y426 696 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 ASB3Q9Y575 518 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 PCDHGA2Q9Y5H1 932 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 CLIC4Q9Y696 253 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 PIAS3Q9Y6X2 628 aa11.99□□□□□ -0.49
CCDC88C-213ENST00000557455 DNAH14Q0VDD8 3507 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 F5P12259 2224 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 ZNF638Q14966 1978 aaKnown RBP11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 DENND4CQ5VZ89 1909 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 KIF26AQ9ULI4 1882 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 ANO9A1A5B4 782 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 SHISA7A6NL88 538 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 CYB561D2O14569 222 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 FGF19O95750 216 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 CYP11A1P05108 521 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 TXLNAP40222 546 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 TAF6P49848 677 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 MTAPQ13126 283 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 FZD5Q13467 585 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 CUL4AQ13619 759 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 PTPAQ15257 358 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 SLC39A12Q504Y0 691 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 RRAGBQ5VZM2 374 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 USP49Q70CQ1 688 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 ERMP1Q7Z2K6 904 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 DNAJB7Q7Z6W7 309 aaPredicted RBP11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 ITIH5Q86UX2 942 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 METTL23Q86XA0 190 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 SFR1Q86XK3 245 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 KIAA2013Q8IYS2 634 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 THEM5Q8N1Q8 247 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 SUMF1Q8NBK3 374 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 OR10T2Q8NGX3 314 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 FAM200AQ8TCP9 573 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 CSGALNACT1Q8TDX6 532 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 POMGNT1Q8WZA1 660 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 FAM3CQ92520 227 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 PSMG2Q969U7 264 aa11.98□□□□□ -0.49
CCDC88C-213ENST00000557455 HVCN1Q96D96 273 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms