RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 FBXL5Q9UKA1 691 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 DSEQ9UL01 958 aa12.32□□□□□ -0.44
CCDC88C-212ENST00000556767 IKBKBO14920 756 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 TGM5O43548 720 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 STX10O60499 249 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 C4BPAP04003 597 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 CPB1P15086 417 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 PIK3CAP42336 1068 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 TNNC1P63316 161 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 CLDN10P78369 228 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 MRPS5P82675 430 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 PPP3CAQ08209 521 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 NCOA4Q13772 614 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 COL19A1Q14993 1142 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 RSPO2Q6UXX9 243 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 SV2AQ7L0J3 742 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 FILIP1Q7Z7B0 1213 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 ZC3H3Q8IXZ2 948 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 C12orf76Q8N812 135 aaPredicted RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 BORCS6Q96GS4 357 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 MMS19Q96T76 1030 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 METTL14Q9HCE5 456 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.31□□□□□ -0.445e-14■■■■■ 211.5
CCDC88C-212ENST00000556767 MAN1C1Q9NR34 630 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 DZANK1Q9NVP4 752 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 TMEM63CQ9P1W3 806 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 NXF1Q9UBU9 619 aaKnown RBP12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 DPP7Q9UHL4 492 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 CHD9Q3L8U1 2897 aa12.31□□□□□ -0.44
CCDC88C-212ENST00000556767 LAMA2P24043 3122 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 OAZ2O95190 189 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ATICP31939 592 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ELF1P32519 619 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 KCNQ1P51787 676 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ROR1Q01973 937 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 KCNC3Q14003 757 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 RAB33AQ14088 237 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 MRPL58Q14197 206 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ZNF699Q32M78 642 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 WDR72Q3MJ13 1102 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 LEXMQ3ZCV2 418 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ZACNQ401N2 412 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ZNF667Q5HYK9 610 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 C1orf220Q5T0J3 134 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 RARS2Q5T160 578 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 LIN9Q5TKA1 542 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 FOXR2Q6PJQ5 311 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 TMEM184AQ6ZMB5 413 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 RBM43Q6ZSC3 357 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 FRMD5Q7Z6J6 570 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 PDCL2Q8N4E4 241 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 KREMEN2Q8NCW0 462 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 CCDC150Q8NCX0 1101 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ATXN2LQ8WWM7 1075 aaKnown RBP12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 ELMO3Q96BJ8 720 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 TMEM8AQ9HCN3 771 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 GDAP2Q9NXN4 497 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 L1RE1Q9UN81 338 aa12.3□□□□□ -0.44
CCDC88C-212ENST00000556767 PLXNA3P51805 1871 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 CDH23Q9H251 3354 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 OR6C75A6NL08 312 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 VNN1O95497 513 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 GNA14O95837 355 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 HLA-DRAP01903 254 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 CYP11A1P05108 521 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 CCDC192P0DO97 292 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 HOXB8P17481 243 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ERCC5P28715 1186 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 GTF2H1P32780 548 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 MXI1P50539 228 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 MYL7Q01449 175 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ENPEPQ07075 957 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 STX1AQ16623 288 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 SGSM1Q2NKQ1 1148 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 KRT39Q6A163 491 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 PTCRAQ6ISU1 281 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 SLC8B1Q6J4K2 584 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 CES5AQ6NT32 575 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 SYCE2Q6PIF2 218 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 TMC5Q6UXY8 1006 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ADGRF2Q8IZF7 708 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 TOP6BLQ8N6T0 577 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ZNF461Q8TAF7 563 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 TAS1R2Q8TE23 839 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 MSLNLQ96KJ4 702 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 PGLYRP2Q96PD5 576 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ASB2Q96Q27 587 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 PI4K2AQ9BTU6 479 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 OXCT2Q9BYC2 517 aaPredicted RBP12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 IMPG2Q9BZV3 1241 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 PLEKHA4Q9H4M7 779 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 SFXN1Q9H9B4 322 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 ANO10Q9NW15 660 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 DDX43Q9NXZ2 648 aaKnown RBP12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 POLIQ9UNA4 740 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 FAM50BQ9Y247 325 aa12.29□□□□□ -0.44
CCDC88C-212ENST00000556767 WDR27A2RRH5 827 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 PRRG1O14668 218 aa12.28□□□□□ -0.44
CCDC88C-212ENST00000556767 TBC1D4O60343 1298 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms