RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 FAM207AQ9NSI2 230 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-221ENST00000555773 COLQQ9Y215 455 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-221ENST00000555773 LZTS1Q9Y250 596 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 COL4A6Q14031 1691 aa13.36□□□□□ -0.27
SHMT2-221ENST00000555773 RANBP2P49792 3224 aaKnown RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 F8W810 466 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 NOL4O94818 638 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 ADCY5O95622 1261 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 TRIM21P19474 475 aaKnown RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 FGFR3P22607 806 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 CTNNB1P35222 781 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 ASPAP45381 313 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 LHX1P48742 406 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 UBE3AQ05086 875 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 BMS1Q14692 1282 aaKnown RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 SOWAHAQ2M3V2 549 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 USP41Q3LFD5 358 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 PDXDC1Q6P996 788 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 TMEM173Q86WV6 379 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 RNF168Q8IYW5 571 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 PPM1KQ8N3J5 372 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 KLHL23Q8NBE8 558 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 HASPINQ8TF76 798 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 TIFAQ96CG3 184 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 C11orf84Q9BUA3 381 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 NAA15Q9BXJ9 866 aaKnown RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 OXCT2Q9BYC2 517 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 STK33Q9BYT3 514 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 GPR62Q9BZJ7 368 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 DNAI2Q9GZS0 605 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 NKX2-4Q9H2Z4 354 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.35□□□□□ -0.27
SHMT2-221ENST00000555773 DNAJC12Q9UKB3 198 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 SSX2IPQ9Y2D8 614 aa13.35□□□□□ -0.27
SHMT2-221ENST00000555773 GABRDO14764 452 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 OAZ2O95190 189 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 SOD2P04179 222 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 WEE2P0C1S8 567 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 WARSP23381 471 aaKnown RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 DNAJB2P25686 324 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 CDC25BP30305 580 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 GNL1P36915 607 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 KLK7P49862 253 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 POLR2FP61218 127 aaKnown RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 TRIM14Q14142 442 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 FAM171A1Q5VUB5 890 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 WSCD1Q658N2 575 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 PPP2R2DQ66LE6 453 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 RRAGAQ7L523 313 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 UNC93AQ86WB7 457 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 FMNL3Q8IVF7 1028 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 ARHGEF19Q8IW93 802 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 THEM5Q8N1Q8 247 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 PDCL2Q8N4E4 241 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 BCL7CQ8WUZ0 217 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 ANP32BQ92688 251 aaKnown RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 C17orf80Q9BSJ5 609 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 TTPALQ9BTX7 342 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 GANQ9H2C0 597 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 CHST7Q9NS84 486 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 CEP72Q9P209 647 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 MYO6Q9UM54 1294 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 BARX2Q9UMQ3 279 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 L1RE1Q9UN81 338 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 POLIQ9UNA4 740 aa13.34□□□□□ -0.27
SHMT2-221ENST00000555773 TNRC18O15417 2968 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-221ENST00000555773 RALGAPA2Q2PPJ7 1873 aa13.33□□□□□ -0.27
SHMT2-221ENST00000555773 A0A1W2PQJ5 194 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 H3BNC9 293 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 H7C4K7 107 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 I3L4J1 428 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 ARHGEF15O94989 841 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 TPM1P09493 284 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 YWHAHQ04917 246 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-221ENST00000555773 INCA1Q0VD86 236 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 MRPL58Q14197 206 aaKnown RBP13.33□□□□□ -0.28
SHMT2-221ENST00000555773 IQCEQ6IPM2 695 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 KIAA1841Q6NSI8 718 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 GJB7Q6PEY0 223 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 ANKS3Q6ZW76 656 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 TAS1R1Q7RTX1 841 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 CACNA2D4Q7Z3S7 1137 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 PPFIBP1Q86W92 1011 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 ADGRF2Q8IZF7 708 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 VPS52Q8N1B4 723 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 FBXO22Q8NEZ5 403 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 ZNF397Q8NF99 534 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-221ENST00000555773 SPPL3Q8TCT6 385 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 ELMO3Q96BJ8 720 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 KREMEN1Q96MU8 473 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 HERC2P3Q9BVR0 1158 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 NUCKS1Q9H1E3 243 aaKnown RBP13.33□□□□□ -0.28
SHMT2-221ENST00000555773 SNX25Q9H3E2 840 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 SMYD3Q9H7B4 428 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 CISHQ9NSE2 258 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 CAPN11Q9UMQ6 739 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 CNTN6Q9UQ52 1028 aa13.33□□□□□ -0.28
SHMT2-221ENST00000555773 FNDC1Q4ZHG4 1894 aaPredicted RBP13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms