RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 CETN1Q12798 172 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 KCNH2Q12809 1159 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 LRMPQ12912 555 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 KRT39Q6A163 491 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 LRRC8AQ8IWT6 810 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 GPR65Q8IYL9 337 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 RNF168Q8IYW5 571 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-218ENST00000555213 MICALL1Q8N3F8 863 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 TC2NQ8N9U0 490 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 RIN2Q8WYP3 895 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-218ENST00000555213 HPDLQ96IR7 371 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 VN1R3Q9BXE9 311 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 GPR62Q9BZJ7 368 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 TTYH3Q9C0H2 523 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 MMRN2Q9H8L6 949 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 TMEM8AQ9HCN3 771 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 DSEQ9UL01 958 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 PCDHB8Q9UN66 801 aa11.72□□□□□ -0.53
SHMT2-218ENST00000555213 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.72□□□□□ -0.53
SHMT2-218ENST00000555213 CUL9Q8IWT3 2517 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 KPNA7A9QM74 516 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 H7C4K7 107 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 I3L4J1 428 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 C2CD2LO14523 706 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 PPEF2O14830 753 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 EPHB6O15197 1021 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 NOL4O94818 638 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 GYPCP04921 128 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 TPM2P07951 284 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 SRGAP2BP0DMP2 458 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 P4HA1P13674 534 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 FGFR3P22607 806 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 DNAJB1P25685 340 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ATICP31939 592 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 BRCC3P46736 316 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 GCLMP48507 274 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 AARSP49588 968 aaKnown RBP eCLIP11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ERVFC1P60507 584 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 TNNC1P63316 161 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 NCOA4Q13772 614 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ADGRE1Q14246 886 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 SYCP1Q15431 976 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 PTPN14Q15678 1187 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ZNF699Q32M78 642 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ZACNQ401N2 412 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 TDRD10Q5VZ19 366 aaKnown RBP11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ZNF280DQ6N043 979 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ELMSAN1Q6PJG2 1045 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ANKS3Q6ZW76 656 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 SV2AQ7L0J3 742 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 METTL23Q86XA0 190 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 TMEM139Q8IV31 216 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 ANKRD20A12PQ8NF67 263 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 PIK3R5Q8WYR1 880 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 TAF4BQ92750 862 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 FAM84AQ96KN4 292 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 CDCA3Q99618 268 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-218ENST00000555213 OXCT2Q9BYC2 517 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-218ENST00000555213 CHST7Q9NS84 486 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 SIX4Q9UIU6 781 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 IRAK3Q9Y616 596 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 MTCH2Q9Y6C9 303 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.71□□□□□ -0.535e-7■■□□□ 13.5
SHMT2-218ENST00000555213 ANK1P16157 1881 aa11.71□□□□□ -0.53
SHMT2-218ENST00000555213 C2orf71A6NGG8 1288 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 M0QZQ0 153 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 NCK2O43639 380 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 HUS1O60921 280 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 CXCL14O95715 111 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 STAU1O95793 577 aaKnown RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 EFEMP2O95967 443 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 C4BPAP04003 597 aaKnown RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 TPM3P06753 285 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 ADH1AP07327 375 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 TYMPP19971 482 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 TKTP29401 623 aaKnown RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 IRS1P35568 1242 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 NDUFV1P49821 464 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 ADKP55263 362 aaKnown RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 CCZ1BP86790 482 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 CCZ1P86791 482 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 MYL7Q01449 175 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 YWHAHQ04917 246 aaPredicted RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 PPP3CAQ08209 521 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 CAMK1Q14012 370 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 PSMD5Q16401 504 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 SGSM1Q2NKQ1 1148 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 RTP2Q5QGT7 225 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 PPFIBP1Q86W92 1011 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 MRPL43Q8N983 215 aaKnown RBP11.7□□□□□ -0.54
SHMT2-218ENST00000555213 LMO3Q8TAP4 145 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 ZNF516Q92618 1163 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 B3GALT6Q96L58 329 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 SENP8Q96LD8 212 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 TLE6Q9H808 572 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 SNX9Q9Y5X1 595 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 PLXNA4Q9HCM2 1894 aa11.7□□□□□ -0.54
SHMT2-218ENST00000555213 A0A0C4DFX4 3053 aa11.69□□□□□ -0.54
SHMT2-218ENST00000555213 TRIP11Q15643 1979 aa11.69□□□□□ -0.54
SHMT2-218ENST00000555213 CYB561D2O14569 222 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms