RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PLA2G5P39877 138 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 WNT7BP56706 349 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 ADCY1Q08828 1119 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 MTSS1LQ765P7 747 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 C1orf127Q8N9H9 656 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 ZSWIM2Q8NEG5 633 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 FGF13Q92913 245 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 HPS3Q969F9 1004 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 CYP4F11Q9HBI6 524 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 AGPAT3Q9NRZ7 376 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 GDE1Q9NZC3 331 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 WDFY4Q6ZS81 3184 aa17.33■□□□□ 0.36
CCDC88C-209ENST00000554872 ZNF233A6NK53 670 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 KLRC4O43908 158 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 VNN2O95498 520 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SRFP11831 508 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 PTPN2P17706 415 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 NTHL1P78549 312 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SMARCB1Q12824 385 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 PLD1Q13393 1074 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 CUL4BQ13620 913 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 PRSS36Q5K4E3 855 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 RNF19BQ6ZMZ0 732 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 HS2ST1Q7LGA3 356 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 NPAS3Q8IXF0 933 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SLC44A3Q8N4M1 653 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 PAGE5Q96GU1 130 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SMOC2Q9H3U7 446 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SLC2A4RGQ9NR83 387 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 HCFC1R1Q9NWW0 138 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 GDAP2Q9NXN4 497 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 HSPBP1Q9NZL4 362 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 SERTAD1Q9UHV2 236 aa17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 TIMM13Q9Y5L4 95 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-209ENST00000554872 DOCK6Q96HP0 2047 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 KPNA7A9QM74 516 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 CYB561D2O14569 222 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 ZNF197O14709 1029 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 ARPP19P56211 112 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 TFAMQ00059 246 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 PSMD2Q13200 908 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 CENPPQ6IPU0 288 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 ELMOD1Q8N336 334 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 ITFG1Q8TB96 612 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 GOLGA5Q8TBA6 731 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 C2orf15Q8WU43 125 aaKnown RBP17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 ZCWPW1Q9H0M4 648 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 BLZF1Q9H2G9 400 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 INTS13Q9NVM9 706 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 WNT16Q9UBV4 365 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 POLIQ9UNA4 740 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 YIPF1Q9Y548 306 aa17.31■□□□□ 0.36
CCDC88C-209ENST00000554872 MTMR11A4FU01 709 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 GOLGA8IPA6NC78 632 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 GOLGA8JA6NMD2 632 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 CASP1P29466 404 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 AFMP43652 599 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 SNRNP35Q16560 246 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 KNOP1Q1ED39 458 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 SLC5A9Q2M3M2 681 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 METTL23Q86XA0 190 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 WDR49Q8IV35 697 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 OR10T2Q8NGX3 314 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 RTP3Q9BQQ7 232 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 PCIF1Q9H4Z3 704 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 PDE11AQ9HCR9 933 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 SIX4Q9UIU6 781 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 MRPS23Q9Y3D9 190 aaKnown RBP17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 ASB3Q9Y575 518 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 NUMBLQ9Y6R0 609 aa17.3■□□□□ 0.36
CCDC88C-209ENST00000554872 A0A1B0GVL5 298 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 PRPF40AO75400 957 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 ITGB3P05106 788 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 POLR2BP30876 1174 aaKnown RBP17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 SYKP43405 635 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 CLCN5P51795 746 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 RBP5P82980 135 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 TWF1Q12792 350 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 PSMD6Q15008 389 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 IQCEQ6IPM2 695 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 LIMS2Q7Z4I7 341 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 CBWD2Q8IUF1 395 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 SLC9A9Q8IVB4 645 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 THEM5Q8N1Q8 247 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 TMEM86AQ8N2M4 240 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 XXYLT1Q8NBI6 393 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 RSAD2Q8WXG1 361 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 ANKRD36BP1Q96IX9 119 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 MTMR12Q9C0I1 747 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 CEP72Q9P209 647 aa17.29■□□□□ 0.36
CCDC88C-209ENST00000554872 ECI2O75521 394 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 OR4Q2P0C623 313 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 TMEM191BP0C7N4 346 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 AVPR2P30518 371 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 NDUFA8P51970 172 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 NUCB2P80303 420 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 DUOXA2Q1HG44 320 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 WSCD1Q658N2 575 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 DPH6Q7L8W6 267 aa17.28■□□□□ 0.36
CCDC88C-209ENST00000554872 GRAMD1CQ8IYS0 662 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms