RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 KRT35Q92764 455 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 FAM124BQ9H5Z6 455 aaPredicted RBP28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 VIPAS39Q9H9C1 493 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 SCINQ9Y6U3 715 aa28.04■■■□□ 2.08
CCDC88C-205ENST00000553403 RAD51CO43502 376 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 NPTXRO95502 500 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 P4HA1P13674 534 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 CTGFP29279 349 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 CDH5P33151 784 aaPredicted RBP28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 BEX3Q00994 111 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 HIC1Q14526 733 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 PLEKHA7Q6IQ23 1121 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 NOTUMQ6P988 496 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 C11orf70Q9BRQ4 267 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 DUSP11O75319 330 aaKnown RBP28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 GLI1P08151 1106 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 PAEPP09466 180 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 GNAT1P11488 350 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 BRD2P25440 801 aaKnown RBP28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 FCGRTP55899 365 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 RBP5P82980 135 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 TMEM62Q0P6H9 643 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 WDR72Q3MJ13 1102 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 TMEM35BQ8NCS4 154 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 OSMRQ99650 979 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 CDHR5Q9HBB8 845 aa28.03■■■□□ 2.08
CCDC88C-205ENST00000553403 C17orf102A2RUQ5 167 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 SART1O43290 800 aaKnown RBP28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 MMP8P22894 467 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 HOXC8P31273 242 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 SEL1L2Q5TEA6 688 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 NME8Q8N427 588 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 DNAJB3Q8WWF6 145 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 ACBD3Q9H3P7 528 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 GINS2Q9Y248 185 aa28.02■■■□□ 2.08
CCDC88C-205ENST00000553403 GOLGA6L10A0A0M3HER8 536 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 A0A0U1RQG5 324 aaPredicted RBP28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 MYO1FO00160 1098 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 CALB1P05937 261 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 ITGA4P13612 1032 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 EIF4BP23588 611 aaKnown RBP28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 EPHB4P54760 987 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 PURAQ00577 322 aaKnown RBP28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 ZNF211Q13398 564 aaPredicted RBP28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 EMBQ6PCB8 327 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 MMS22LQ6ZRQ5 1243 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 EIF1ADQ8N9N8 165 aaKnown RBP28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 CCDC26Q8TAB7 109 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 EPB41L5Q9HCM4 733 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 DPP3Q9NY33 737 aa28.01■■■□□ 2.07
CCDC88C-205ENST00000553403 BHMG1C9JSJ3 638 aaPredicted RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 TREHO43280 583 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 MED7O43513 233 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 POLR2BP30876 1174 aaKnown RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 TNNT3P45378 269 aaPredicted RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 MARCKSL1P49006 195 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 RWDD2BP57060 319 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 LACTBP83111 547 aaPredicted RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 GUCY2DQ02846 1103 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 GPS2Q13227 327 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 SMC1AQ14683 1233 aaKnown RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 ZNF394Q53GI3 561 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 MFSD14CQ5VZR4 134 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 GSPT2Q8IYD1 628 aaKnown RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 KIF12Q96FN5 646 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 HPDLQ96IR7 371 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 SDCBP2Q9H190 292 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 PARVAQ9NVD7 372 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 AGAP1Q9UPQ3 857 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 CEP83Q9Y592 693 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 SSTR3P32745 418 aaPredicted RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 PAK2Q13177 524 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 MAMLD1Q13495 774 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 MAATS1Q7Z4T9 603 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 TTC39CQ8N584 583 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 TRPV1Q8NER1 839 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 TFAP2BQ92481 460 aa28■■■□□ 2.07
CCDC88C-205ENST00000553403 DDX47Q9H0S4 455 aaKnown RBP28■■■□□ 2.07
CCDC88C-205ENST00000553403 RALGAPA2Q2PPJ7 1873 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 PROSCO94903 275 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 ALDH1A1P00352 501 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 GJA9P57773 515 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 NNTQ13423 1086 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 SNX17Q15036 470 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 PPP1R13LQ8WUF5 828 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 SNX27Q96L92 541 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 LHX5Q9H2C1 402 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 LCMT1Q9UIC8 334 aa27.99■■■□□ 2.07
CCDC88C-205ENST00000553403 TRPA1O75762 1119 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 CYBAP13498 195 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 RAP1GAPP47736 663 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 CRYBB1P53674 252 aaPredicted RBP27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 YARSP54577 528 aaKnown RBP27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 RAD23BP54727 409 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 CPNE8Q86YQ8 564 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 C7orf31Q8N865 590 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 FEZF2Q8TBJ5 459 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 CAVIN3Q969G5 261 aa27.98■■■□□ 2.07
CCDC88C-205ENST00000553403 HINFPQ9BQA5 517 aa27.98■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms