RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 I3L4J1 428 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 SPTLC1O15269 473 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TBC1D4O60343 1298 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TOM1L1O75674 476 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 MICAL2O94851 1124 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 LRG1P02750 347 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 RHOP08100 348 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 ATF2P15336 505 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 PTPN2P17706 415 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 ELF1P32519 619 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 MAGEA9P43362 315 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 BRCC3P46736 316 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 GCGRP47871 477 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 STRN3Q13033 797 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 SNW1Q13573 536 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 MRPL58Q14197 206 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 ZNF528Q3MIS6 628 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 SLC44A4Q53GD3 710 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 HYIQ5T013 277 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TPGS2Q68CL5 300 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 RINT1Q6NUQ1 792 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 ZPBP2Q6X784 338 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 DTHD1Q6ZMT9 781 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 C1orf186Q6ZWK4 172 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TCEAL8Q8IYN2 117 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 SECISBP2LQ93073 1101 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 CHAMP1Q96JM3 812 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 ZMAT2Q96NC0 199 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 NELL2Q99435 816 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 KIF2CQ99661 725 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 KXD1Q9BQD3 176 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TCHPQ9BT92 498 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 RUSC1Q9BVN2 902 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TARS2Q9BW92 718 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 BCO2Q9BYV7 579 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 FOXQ1Q9C009 403 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 HCFC1R1Q9NWW0 138 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 KCND2Q9NZV8 630 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 MAFFQ9ULX9 164 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 MRPS23Q9Y3D9 190 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 KIF3AQ9Y496 699 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 NUB1Q9Y5A7 615 aa8.33□□□□□ -1.08
NEK3-201ENST00000550331 TDRD15B5MCY1 1934 aaKnown RBP8.33□□□□□ -1.08
NEK3-201ENST00000550331 PRR5-ARHGAP8B1AHC4 643 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 H0YCG3 227 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 PRRG1O14668 218 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SLC16A4O15374 487 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 LAMTOR5O43504 91 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 LRRN2O75325 713 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 PLS3P13797 630 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 GLULP15104 373 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SCP2P22307 547 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SMTNP53814 917 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 MARSP56192 900 aaKnown RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 OSTNP61366 133 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 ARHGAP8P85298 464 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 LMNB2Q03252 620 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 NOLC1Q14978 699 aaKnown RBP eCLIP8.32□□□□□ -1.08
NEK3-201ENST00000550331 IL17AQ16552 155 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SLC5A9Q2M3M2 681 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 RILPL1Q5EBL4 403 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 PRSS36Q5K4E3 855 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 LCE3BQ5TA77 95 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 ZNF280DQ6N043 979 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 MAML2Q8IZL2 1156 aaPredicted RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 SYT2Q8N9I0 419 aaPredicted RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 LEMD2Q8NC56 503 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 TMEM161BQ8NDZ6 487 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 ST13P5Q8NFI4 369 aaPredicted RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 ATRIPQ8WXE1 791 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 ING5Q8WYH8 240 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 KCNN1Q92952 543 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 ELSPBP1Q96BH3 223 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SUSD3Q96L08 255 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 MMTAG2Q9BU76 263 aaKnown RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 OXCT2Q9BYC2 517 aaPredicted RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 CYP4F11Q9HBI6 524 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SPATA6Q9NWH7 488 aaPredicted RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 ANKFY1Q9P2R3 1169 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 FBXO4Q9UKT5 387 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 USP18Q9UMW8 372 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 SMG5Q9UPR3 1016 aaKnown RBP8.32□□□□□ -1.08
NEK3-201ENST00000550331 ATRXP46100 2492 aa8.32□□□□□ -1.08
NEK3-201ENST00000550331 FAM208BQ5VWN6 2430 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 COL4A3Q01955 1670 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 CNOT1A5YKK6 2376 aaKnown RBP8.31□□□□□ -1.08
NEK3-201ENST00000550331 FAM170BA6NMN3 283 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 ZNF197O14709 1029 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 NCAM2O15394 837 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 MEFVO15553 781 aaPredicted RBP8.31□□□□□ -1.08
NEK3-201ENST00000550331 MAN1A2O60476 641 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 ADRB1P08588 477 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 MAPTP10636 758 aaKnown RBP8.31□□□□□ -1.08
NEK3-201ENST00000550331 HARSP12081 509 aaKnown RBP8.31□□□□□ -1.08
NEK3-201ENST00000550331 CEBPBP17676 345 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 CDC25AP30304 524 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 MCM4P33991 863 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 SLC12A3P55017 1021 aa8.31□□□□□ -1.08
NEK3-201ENST00000550331 ATP2C1P98194 919 aaPredicted RBP8.31□□□□□ -1.08
NEK3-201ENST00000550331 CSTF1Q05048 431 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms