RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 GJA1P17302 382 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 CNR2P34972 360 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 RBM25P49756 843 aaKnown RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 PRPF4BQ13523 1007 aaKnown RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 AGERQ15109 404 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 SF3A2Q15428 464 aaKnown RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 UPP1Q16831 310 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 AASDHQ4L235 1098 aaPredicted RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 Q6ZS52 159 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 LONP2Q86WA8 852 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 SPEM1Q8N4L4 309 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 DEPDC1BQ8WUY9 529 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 DDX1Q92499 740 aaKnown RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 PPP1R10Q96QC0 940 aaKnown RBP11.54□□□□□ -0.56
VPS29-208ENST00000550267 ADPGKQ9BRR6 497 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 CYP4F11Q9HBI6 524 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 PCDHA12Q9UN75 941 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 INSL5Q9Y5Q6 135 aa11.54□□□□□ -0.56
VPS29-208ENST00000550267 TICRRQ7Z2Z1 1910 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 TRAPPC3O43617 180 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 MAN1A2O60476 641 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 MICAL2O94851 1124 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 MYL4P12829 197 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 ATF2P15336 505 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 SOX9P48436 509 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 CCDC6Q16204 474 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 MAPK6Q16659 721 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 WDR44Q5JSH3 913 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 CYP4A22Q5TCH4 519 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 CPLX2Q6PUV4 134 aaKnown RBP11.53□□□□□ -0.56
VPS29-208ENST00000550267 CEP68Q76N32 757 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 RUFY3Q7L099 469 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 TCEAL8Q8IYN2 117 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 ZSCAN18Q8TBC5 510 aaPredicted RBP11.53□□□□□ -0.56
VPS29-208ENST00000550267 BSNDQ8WZ55 320 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 ZNF274Q96GC6 653 aaPredicted RBP11.53□□□□□ -0.56
VPS29-208ENST00000550267 UROC1Q96N76 676 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 CCDC113Q9H0I3 377 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 C2orf40Q9H1Z8 148 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 RXFP3Q9NSD7 469 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 C2orf42Q9NWW7 574 aa11.53□□□□□ -0.56
VPS29-208ENST00000550267 SLC38A8A6NNN8 435 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 HEPACAM2A8MVW5 462 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 ARNTLO00327 626 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 ACKR2O00590 384 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 TM4SF5O14894 197 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 TRIM66O15016 1216 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 FOXD2O60548 495 aaPredicted RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 PAPSS2O95340 614 aaPredicted RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 ATP2B1P20020 1258 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 LIMK1P53667 647 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 SHC2P98077 582 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 SOX4Q06945 474 aaPredicted RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 COL9A2Q14055 689 aaPredicted RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 LRRC32Q14392 662 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 TEAD2Q15562 447 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 CALCRLQ16602 461 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 C6orf118Q5T5N4 469 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 MFSD6LQ8IWD5 586 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 MCPH1Q8NEM0 835 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 CSGALNACT1Q8TDX6 532 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 RSPRY1Q96DX4 576 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 ARRDC1-AS1Q9H2J1 176 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 TTC12Q9H892 705 aaPredicted RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 CEP72Q9P209 647 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 MAP1BP46821 2468 aaKnown RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 CFAP47Q6ZTR5 3102 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 USP24Q9UPU5 2620 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 SPTBN2O15020 2390 aa11.52□□□□□ -0.57
VPS29-208ENST00000550267 TPRP12270 2363 aaKnown RBP11.52□□□□□ -0.57
VPS29-208ENST00000550267 SMIM28A0A1B0GU29 152 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 XRCC6P12956 609 aaKnown RBP eCLIP11.51□□□□□ -0.57
VPS29-208ENST00000550267 XBP1P17861 261 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 TXKP42681 527 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 KPNA1P52294 538 aaPredicted RBP11.51□□□□□ -0.57
VPS29-208ENST00000550267 TWF1Q12792 350 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 DCAF4L1Q3SXM0 396 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 NT5DC1Q5TFE4 455 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 IQCEQ6IPM2 695 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 TXNDC11Q6PKC3 985 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 WDR5BQ86VZ2 330 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 YAF2Q8IY57 180 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 ELMOD1Q8N336 334 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 C12orf50Q8NA57 414 aaPredicted RBP11.51□□□□□ -0.57
VPS29-208ENST00000550267 ARMC2Q8NEN0 867 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 TTC8Q8TAM2 541 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 DEPTORQ8TB45 409 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 MSANTD3Q96H12 275 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 ZNF512Q96ME7 567 aaPredicted RBP11.51□□□□□ -0.57
VPS29-208ENST00000550267 KIFC3Q9BVG8 833 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 TRPV4Q9HBA0 871 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 FBXL5Q9UKA1 691 aa11.51□□□□□ -0.57
VPS29-208ENST00000550267 SPECC1L-ADORA2AF8WAN1 911 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 H7C4K7 107 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 PODXLO00592 558 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 PROS1P07225 676 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 SPATA31C1P0DKV0 1188 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 BMP2P12643 396 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 NAMPTP43490 491 aa11.5□□□□□ -0.57
VPS29-208ENST00000550267 EPHA5P54756 1037 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms