RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CDH8P55286 799 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 TMEM132DQ14C87 1099 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 ARMCX2Q7L311 632 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 CHST7Q9NS84 486 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 CISHQ9NSE2 258 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 CSPG5O95196 566 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 SEPT6Q14141 434 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 ZCWPW2Q504Y3 356 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 HEATR6Q6AI08 1181 aaKnown RBP16.51■□□□□ 0.23
CUX1-211ENST00000546411 CYTH2Q99418 400 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 C10orf88Q9H8K7 445 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 IFT122Q9HBG6 1241 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 GDF3Q9NR23 364 aa16.51■□□□□ 0.23
CUX1-211ENST00000546411 DDX56Q9NY93 547 aaKnown RBP16.51■□□□□ 0.23
CUX1-211ENST00000546411 TPX2Q9ULW0 747 aaKnown RBP16.51■□□□□ 0.23
CUX1-211ENST00000546411 GARTP22102 1010 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 PRUNE1Q86TP1 453 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 BEST2Q8NFU1 509 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 OGTO15294 1046 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 VTNP04004 478 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 SERPINB6P35237 376 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 AARSP49588 968 aaKnown RBP eCLIP16.5■□□□□ 0.233e-6■■■■■ 61.8
CUX1-211ENST00000546411 IER5Q5VY09 327 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 N4BP2L2Q92802 583 aaPredicted RBP16.5■□□□□ 0.23
CUX1-211ENST00000546411 FNTAP49354 379 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 PIGHQ14442 188 aaPredicted RBP16.5■□□□□ 0.23
CUX1-211ENST00000546411 XRRA1Q6P2D8 792 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 TEX2Q8IWB9 1127 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 MCOLN2Q8IZK6 566 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 ZNF606Q8WXB4 792 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 NPHS2Q9NP85 383 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 GPATCH2LQ9NWQ4 482 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 KLK14Q9P0G3 267 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 XPO7Q9UIA9 1087 aaKnown RBP16.5■□□□□ 0.23
CUX1-211ENST00000546411 PIK3CDO00329 1044 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 KIAA0391O15091 583 aaKnown RBP16.5■□□□□ 0.23
CUX1-211ENST00000546411 GBP7Q8N8V2 638 aaPredicted RBP16.5■□□□□ 0.23
CUX1-211ENST00000546411 RDM1Q8NG50 284 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 TMC2Q8TDI7 906 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 HPDLQ96IR7 371 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.5■□□□□ 0.233e-6■□□□□ 8.8
CUX1-211ENST00000546411 ZFP69BQ9UJL9 534 aa16.5■□□□□ 0.23
CUX1-211ENST00000546411 PLSCR1O15162 318 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 PIAS1O75925 651 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 CXCL8P10145 99 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 RARGP13631 454 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 AP3M2P53677 418 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 MRPS9P82933 396 aaKnown RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 CLEC16AQ2KHT3 1053 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 ATP13A4Q4VNC1 1196 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 HYIQ5T013 277 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 KDELC2Q7Z4H8 507 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 USP15Q9Y4E8 981 aaPredicted RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 RIPK3Q9Y572 518 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 C5P01031 1676 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 PABPN1LA6NDY0 278 aaKnown RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 FLT3P36888 993 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 RFC5P40937 340 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 NAMPTP43490 491 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 KLHL38Q2WGJ6 581 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 MDH1BQ5I0G3 518 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 GYG2O15488 501 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 DDNO94850 711 aaPredicted RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 SHBGP04278 402 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 RPS12P25398 132 aaKnown RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 CLK2P49760 499 aaKnown RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 SNRPFP62306 86 aaKnown RBP16.49■□□□□ 0.23
CUX1-211ENST00000546411 PARP9Q8IXQ6 854 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 ZSWIM2Q8NEG5 633 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 CHST13Q8NET6 341 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 PWWP2AQ96N64 755 aa16.49■□□□□ 0.23
CUX1-211ENST00000546411 FAM47DPA6NHR8 397 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 KRT38O76015 456 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 PROSCO94903 275 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 CTSHP09668 335 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 GARSP41250 739 aaKnown RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 TRPM8Q7Z2W7 1104 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 ERP27Q96DN0 273 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 CPB2Q96IY4 423 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 SAE1Q9UBE0 346 aaPredicted RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 IGKV6D-41A0A0C4DH26 115 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 JAG1P78504 1218 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 OVGP1Q12889 678 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 TAF11Q15544 211 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 KIZQ2M2Z5 673 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 PID1Q7Z2X4 250 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 VSIG10LQ86VR7 867 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 TMEM161BQ8NDZ6 487 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 FAM193BQ96PV7 902 aaPredicted RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 CASZ1Q86V15 1759 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 GCLCP48506 637 aaPredicted RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 RNASELQ05823 741 aaKnown RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 BTNL9Q6UXG8 535 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 ANO5Q75V66 913 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 SCN4BQ8IWT1 228 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 GCOM2Q9BZD3 368 aaPredicted RBP16.48■□□□□ 0.23
CUX1-211ENST00000546411 COL20A1Q9P218 1284 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 TLK1Q9UKI8 766 aa16.48■□□□□ 0.23
CUX1-211ENST00000546411 SCN11AQ9UI33 1791 aa16.47■□□□□ 0.23
CUX1-211ENST00000546411 GSTA1P08263 222 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms