RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NPTX2P47972 431 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 RAC1P63000 192 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TBX2Q13207 712 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 PEX6Q13608 980 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TWISTNBQ3B726 338 aaPredicted RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 ELMOD2Q8IZ81 293 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 TCAIMQ8N3R3 496 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 AOPEPQ8N6M6 819 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 OR8K3Q8NH51 312 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 METTL2AQ96IZ6 378 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 KLHL4Q9C0H6 718 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 SMARCAD1Q9H4L7 1026 aa9.35□□□□□ -0.91
VPS13D-212ENST00000543766 INTS9Q9NV88 658 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 CNOT7Q9UIV1 285 aaKnown RBP9.35□□□□□ -0.91
VPS13D-212ENST00000543766 OVOS2A0A0J9YW53 1432 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 OVOS2Q6IE36 1432 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 A6NJY4 79 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 OR6C65A6NJZ3 312 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 H0YJX3 145 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 FPGTO14772 594 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 AXIN1O15169 862 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 URODP06132 367 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 RETP07949 1114 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PSMA4P25789 261 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 GDI2P50395 445 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 AKR1D1P51857 326 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SPIRE1Q08AE8 756 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 CYLC2Q14093 348 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ACAP2Q15057 778 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 C6orf163Q5TEZ5 329 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 CYB5R2Q6BCY4 276 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF425Q6IV72 752 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 NLRC3Q7RTR2 1065 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 DSG4Q86SJ6 1040 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 RTKN2Q8IZC4 609 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF248Q8NDW4 579 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 POC1BQ8TC44 478 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 AHCYL2Q96HN2 611 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 MEIS3Q99687 375 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 KAT14Q9H8E8 782 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PIH1D3Q9NQM4 214 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 MAFBQ9Y5Q3 323 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PEAK1Q9H792 1746 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 A6NHS1 94 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 LIN7AO14910 233 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SCAMP2O15127 329 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 KMOO15229 486 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PABPC4LP0CB38 370 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 RCVRNP35243 200 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SLC9A3P48764 834 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 IRAK1P51617 712 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF135P52742 658 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PRAMEP78395 509 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PPP2R2BQ00005 443 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SNRNP48Q6IEG0 339 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ALKBH5Q6P6C2 394 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 MIGA2Q7L4E1 593 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ANKS4BQ8N8V4 417 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ARRDC4Q8NCT1 418 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 POF1BQ8WVV4 589 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PRPF31Q8WWY3 499 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ZNF606Q8WXB4 792 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 COL26A1Q96A83 441 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ZPBPQ9BS86 351 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 UNKQ9C0B0 810 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PRDM11Q9NQV5 511 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 CABP1Q9NZU7 370 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PDP2Q9P2J9 529 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SAP30BPQ9UHR5 308 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SIK3Q9Y2K2 1263 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PCDHB2Q9Y5E7 798 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 KDRP35968 1356 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 CAPN8A6NHC0 703 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 CHURC1-FNTBB4DL54 471 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 AKAP10O43572 662 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 NOS2P35228 1153 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 PSMC2P35998 433 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 NFE2Q16621 373 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 FAM228AQ86W67 206 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 TREML1Q86YW5 311 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 SUPT20HQ8NEM7 779 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 RIN3Q8TB24 985 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 EPS8L1Q8TE68 723 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 USB1Q9BQ65 265 aaKnown RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 MBD1Q9UIS9 605 aaPredicted RBP9.34□□□□□ -0.91
VPS13D-212ENST00000543766 AGAP1Q9UPQ3 857 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 POLHQ9Y253 713 aa9.34□□□□□ -0.91
VPS13D-212ENST00000543766 ROBO2Q9HCK4 1378 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 GABBR2O75899 941 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 POP4O95707 220 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 F2P00734 622 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 S100A9P06702 114 aaKnown RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 SLC1A1P43005 524 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 VSNL1P62760 191 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 SF3A3Q12874 501 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 NR5A1Q13285 461 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 DSG2Q14126 1118 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 DOC2AQ14183 400 aa9.33□□□□□ -0.92
VPS13D-212ENST00000543766 TRIP13Q15645 432 aaPredicted RBP9.33□□□□□ -0.92
VPS13D-212ENST00000543766 BNC2Q6ZN30 1099 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms