RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	HUS1	O60921	280 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	PNPLA4	P41247	253 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	MYO1E	Q12965	1108 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	ADAM9	Q13443	819 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	MRPL58	Q14197	206 aa	Known RBP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	PDCD11	Q14690	1871 aa	Known RBP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	PSMD6	Q15008	389 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	GET4	Q7L5D6	327 aa	Predicted RBP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	TRAPPC11	Q7Z392	1133 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	WDR49	Q8IV35	697 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	TDRD5	Q8NAT2	981 aa	Known RBP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	ZNF461	Q8TAF7	563 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	HDAC7	Q8WUI4	952 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	ACSF2	Q96CM8	615 aa	Predicted RBP	11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	HPDL	Q96IR7	371 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	TIGD1	Q96MW7	591 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	CGRRF1	Q99675	332 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	EPHX3	Q9H6B9	360 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.9	□□□□□ -0.5	6e-9	■■■■■ 58.7
DDB1-222	ENST00000543627	ZDHHC7	Q9NXF8	308 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	LIMD1	Q9UGP4	676 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	MUTYH	Q9UIF7	546 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	ITGA11	Q9UKX5	1188 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	DSE	Q9UL01	958 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	SLC27A5	Q9Y2P5	690 aa		11.9	□□□□□ -0.5
DDB1-222	ENST00000543627	ANK1	P16157	1881 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	XYLB	O75191	536 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	SEC24A	O95486	1093 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	CST3	P01034	146 aa	Predicted RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	TYMP	P19971	482 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	NR2F2	P24468	414 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	ACAT1	P24752	427 aa	Known RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	RPL13	P26373	211 aa	Known RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	PRCP	P42785	496 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	UBE2H	P62256	183 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	SLC39A12	Q504Y0	691 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	ZNF658	Q5TYW1	1059 aa	Predicted RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	SLC8B1	Q6J4K2	584 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	KLHL10	Q6JEL2	608 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	C15orf39	Q6ZRI6	1047 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	C12orf56	Q8IXR9	622 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	GUF1	Q8N442	669 aa	Known RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	FAM200A	Q8TCP9	573 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	ZNF516	Q92618	1163 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	ELMO3	Q96BJ8	720 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	ZNF707	Q96C28	371 aa	Predicted RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	IPO9	Q96P70	1041 aa	Known RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	GSDMA	Q96QA5	445 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	TSG101	Q99816	390 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	HCFC1R1	Q9NWW0	138 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	NXF1	Q9UBU9	619 aa	Known RBP	11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	SIX4	Q9UIU6	781 aa		11.89	□□□□□ -0.51
DDB1-222	ENST00000543627	FAM86C2P	A6NEL3	165 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	C19orf67	A6NJJ6	358 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	OR6C75	A6NL08	312 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	LRRIQ3	A6PVS8	624 aa	Predicted RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	LOC730098	B7Z3J9	87 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	TBC1D4	O60343	1298 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	SOAT2	O75908	522 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	OAZ2	O95190	189 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	PDGFRB	P09619	1106 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	KRT13	P13646	458 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	ATF2	P15336	505 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	PAX3	P23760	479 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	FSHR	P23945	695 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	AARS	P49588	968 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	DLG4	P78352	724 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	TWF1	Q12792	350 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	DUSP4	Q13115	394 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	STIM1	Q13586	685 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	UVSSA	Q2YD98	709 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	MGAT5B	Q3V5L5	792 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	TPGS2	Q68CL5	300 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	OTOP3	Q7RTS5	596 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	ELMOD1	Q8N336	334 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	LRRC52	Q8N7C0	313 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	ATAD1	Q8NBU5	361 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	CMAS	Q8NFW8	434 aa	Predicted RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	BORCS6	Q96GS4	357 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	MFSD14A	Q96MC6	490 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	ZNF512	Q96ME7	567 aa	Predicted RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	SEPT5	Q99719	369 aa	Predicted RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	CORO1B	Q9BR76	489 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	WDR6	Q9NNW5	1121 aa	Known RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	DMAC2	Q9NW81	257 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	DDX43	Q9NXZ2	648 aa	Known RBP	11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	MAN1B1	Q9UKM7	699 aa		11.88	□□□□□ -0.51
DDB1-222	ENST00000543627	SCN1A	P35498	2009 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	CLUH	O75153	1309 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	CETN3	O15182	167 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	ABLIM3	O94929	683 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	ASGR2	P07307	311 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	HNRNPA1	P09651	372 aa	Known RBP eCLIP	11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	MYL4	P12829	197 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	ALAD	P13716	330 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	PTPN2	P17706	415 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	PSMC2	P35998	433 aa	Known RBP	11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	ALDH1A3	P47895	512 aa		11.87	□□□□□ -0.51
DDB1-222	ENST00000543627	VAMP7	P51809	220 aa		11.87	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms