RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 B4GALT4O60513 344 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 SNAI1O95863 264 aaPredicted RBP17.35■□□□□ 0.37
COL4A1-204ENST00000543140 MYZAPP0CAP1 466 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 STAG3L1P0CL83 205 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 MMP8P22894 467 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 CDH8P55286 799 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 MTMR3Q13615 1198 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 PWP2Q15269 919 aaKnown RBP17.35■□□□□ 0.37
COL4A1-204ENST00000543140 WDR72Q3MJ13 1102 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 PPTC7Q8NI37 304 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 FAM118BQ9BPY3 351 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 VTA1Q9NP79 307 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 PARVAQ9NVD7 372 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 KLHL11Q9NVR0 708 aa17.35■□□□□ 0.37
COL4A1-204ENST00000543140 BCCIPQ9P287 314 aaKnown RBP eCLIP17.35■□□□□ 0.37
COL4A1-204ENST00000543140 LACTBL1A8MY62 500 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 MEFVO15553 781 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 PPFIA2O75334 1257 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 ERLIN2O94905 339 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 TMOD1P28289 359 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 IRAK1P51617 712 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 GNGT1P63211 74 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 PPP1R7Q15435 360 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 LRIG3Q6UXM1 1119 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 PNMA8AQ86V59 439 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 FEZF2Q8TBJ5 459 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 PPP1R13LQ8WUF5 828 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 SCLT1Q96NL6 688 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 C16orf70Q9BSU1 422 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 TMBIM4Q9HC24 238 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 PRMT7Q9NVM4 692 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 SCINQ9Y6U3 715 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 H3BRB1 525 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 RALAP11233 206 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 CD19P15391 556 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 TCF4P15884 667 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 HPDP32754 393 aaPredicted RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 GTF2A2P52657 109 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 DRG2P55039 364 aaKnown RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 CYP4A22Q5TCH4 519 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 JADE1Q6IE81 842 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 TUT1Q9H6E5 874 aaKnown RBP17.34■□□□□ 0.37
COL4A1-204ENST00000543140 LRRC19Q9H756 370 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 SIX4Q9UIU6 781 aa17.34■□□□□ 0.37
COL4A1-204ENST00000543140 SCN4AP35499 1836 aa17.33■□□□□ 0.37
COL4A1-204ENST00000543140 SHOX2O60902 331 aaPredicted RBP17.33■□□□□ 0.36
COL4A1-204ENST00000543140 ECEL1O95672 775 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 PDCLQ13371 301 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 AMHR2Q16671 573 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 ATP13A4Q4VNC1 1196 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 RHOT1Q8IXI2 618 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 WDTC1Q8N5D0 677 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 C1orf127Q8N9H9 656 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 GTF3C2Q8WUA4 911 aaPredicted RBP17.33■□□□□ 0.36
COL4A1-204ENST00000543140 NLRP7Q8WX94 980 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 MCEEQ96PE7 176 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 TXLNGYQ9BZA5 131 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 KATNBL1Q9H079 304 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 PDZD7Q9H5P4 517 aa17.33■□□□□ 0.36
COL4A1-204ENST00000543140 R3HDM2Q9Y2K5 976 aaKnown RBP17.33■□□□□ 0.36
COL4A1-204ENST00000543140 ITGB3P05106 788 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 ARF4P18085 180 aaPredicted RBP17.32■□□□□ 0.36
COL4A1-204ENST00000543140 NR1D1P20393 614 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 FNTAP49354 379 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 LACTBP83111 547 aaPredicted RBP17.32■□□□□ 0.36
COL4A1-204ENST00000543140 TRIP13Q15645 432 aaPredicted RBP17.32■□□□□ 0.36
COL4A1-204ENST00000543140 ZFYVE27Q5T4F4 411 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 GPR142Q7Z601 462 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 ANKS1BQ7Z6G8 1248 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 C12orf50Q8NA57 414 aaPredicted RBP17.32■□□□□ 0.36
COL4A1-204ENST00000543140 TMEM35BQ8NCS4 154 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 PASKQ96RG2 1323 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 MAGEB2O15479 319 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 STRNO43815 780 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 IL18RAPO95256 599 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 SMPD1P17405 629 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 ZNF667Q5HYK9 610 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 MTHFD1LQ6UB35 978 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 RNF25Q96BH1 459 aaPredicted RBP17.32■□□□□ 0.36
COL4A1-204ENST00000543140 CALCOCO1Q9P1Z2 691 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 GINS2Q9Y248 185 aa17.32■□□□□ 0.36
COL4A1-204ENST00000543140 HMGB1P1B2RPK0 211 aaPredicted RBP17.31■□□□□ 0.36
COL4A1-204ENST00000543140 PI4K2BG5E9Z4 385 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 PPFIA4O75335 1185 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 FGFR4P22455 802 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 PMS2P54278 862 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 KRT17Q04695 432 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 IFFO1Q0D2I5 559 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 UBAP2Q5T6F2 1119 aaKnown RBP17.31■□□□□ 0.36
COL4A1-204ENST00000543140 DENND1BQ6P3S1 775 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 DCUN1D2Q6PH85 259 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 LINC01465Q8N7H1 131 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 NFKBIZQ9BYH8 718 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 TMEM191CA6NGB0 347 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 LSM8O95777 96 aaKnown RBP17.31■□□□□ 0.36
COL4A1-204ENST00000543140 GUCY1A3Q02108 690 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 DNAJC24Q6P3W2 148 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 ERICH1Q86X53 443 aa17.31■□□□□ 0.36
COL4A1-204ENST00000543140 SDCBP2Q9H190 292 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms