RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 ZFYVE19Q96K21 471 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 DRC1Q96MC2 740 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 HAPLN2Q9GZV7 340 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 GTSE1Q9NYZ3 720 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 ANKFY1Q9P2R3 1169 aa19.43■□□□□ 0.7
CLSTN3-214ENST00000542663 CXCL8P10145 99 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 MARCKSP29966 332 aaPredicted RBP19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 AARSP49588 968 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 NEK4P51957 841 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 SPAG1Q07617 926 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 DUSP4Q13115 394 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 CCINQ13939 588 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 C1orf228Q6PIY5 440 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 GAREM2Q75VX8 874 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 TTC8Q8TAM2 541 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 C8orf76Q96K31 380 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 NTPCRQ9BSD7 190 aaKnown RBP19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 C17orf75Q9HAS0 396 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 DNM3Q9UQ16 869 aa19.42■□□□□ 0.7
CLSTN3-214ENST00000542663 TOM1L1O75674 476 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 LRPAP1P30533 357 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 GPR17Q13304 367 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 PON2Q15165 354 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 ZBTB6Q15916 424 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 DGKKQ5KSL6 1271 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 RALGPS2Q86X27 583 aaPredicted RBP19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 TTC9BQ8N6N2 239 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 NUP205Q92621 2012 aa19.41■□□□□ 0.7
CLSTN3-214ENST00000542663 TTC26A0AVF1 554 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 CDC25AP30304 524 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 HOXA6P31267 233 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 TRAPPC10P48553 1259 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 TOB1P50616 345 aaPredicted RBP19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 EPHB3P54753 998 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 PLD1Q13393 1074 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 IL17AQ16552 155 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 CENPPQ6IPU0 288 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 TMEM161BQ8NDZ6 487 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 FBXO18Q8NFZ0 1043 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 MMTAG2Q9BU76 263 aaKnown RBP19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 OXCT2Q9BYC2 517 aaPredicted RBP19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 SLC27A5Q9Y2P5 690 aa19.4■□□□□ 0.7
CLSTN3-214ENST00000542663 CHD6Q8TD26 2715 aa19.39■□□□□ 0.7
CLSTN3-214ENST00000542663 MTMR11A4FU01 709 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 SOAT2O75908 522 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 MAPTP10636 758 aaKnown RBP19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 CACNB1Q02641 598 aaPredicted RBP19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 MCL1Q07820 350 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 TNK2Q07912 1038 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 RAD51AP2Q09MP3 1159 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 STRN3Q13033 797 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 ARHGAP29Q52LW3 1261 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 WDR5BQ86VZ2 330 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 ATAD1Q8NBU5 361 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 SPIRE2Q8WWL2 714 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 PSMG2Q969U7 264 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 TMEM209Q96SK2 561 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 PLEKHA5Q9HAU0 1116 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 PCDHB6Q9Y5E3 794 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 STK24Q9Y6E0 443 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 FRYQ5TBA9 3013 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 ANAPC1Q9H1A4 1944 aa19.39■□□□□ 0.69
CLSTN3-214ENST00000542663 OR6C75A6NL08 312 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 PPEF2O14830 753 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 TM4SF5O14894 197 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 CLDN3O15551 220 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 FOXD2O60548 495 aaPredicted RBP19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 PRAMEF12O95522 483 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 GUCY2CP25092 1073 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 TNFSF9P41273 254 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 ALDH1A3P47895 512 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 GUCY2FP51841 1108 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 GPR158Q5T848 1215 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 PKN3Q6P5Z2 889 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 ZPBP2Q6X784 338 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 CEP68Q76N32 757 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 DNAJB7Q7Z6W7 309 aaPredicted RBP19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 CCDC83Q8IWF9 413 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 KIF12Q96FN5 646 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 ATXN3LQ9H3M9 355 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 RXFP3Q9NSD7 469 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 OBP2AQ9NY56 170 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 ASB3Q9Y575 518 aa19.38■□□□□ 0.69
CLSTN3-214ENST00000542663 EXTL3O43909 919 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 PLS3P13797 630 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 CYP3A5P20815 502 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 GABRR2P28476 465 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 LIMK1P53667 647 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 MYBPC2Q14324 1141 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 SF3A2Q15428 464 aaKnown RBP19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 CCDC6Q16204 474 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 KRT79Q5XKE5 535 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 OVOS1Q6IE37 1185 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 USP37Q86T82 979 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 SYNPOQ8N3V7 929 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 CHAMP1Q96JM3 812 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 TIPINQ9BVW5 301 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 RAB34Q9BZG1 259 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 ARRDC1-AS1Q9H2J1 176 aa19.37■□□□□ 0.69
CLSTN3-214ENST00000542663 UBQLN1Q9UMX0 589 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms