RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 SP2Q02086 613 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 CNTN2Q02246 1040 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PPIDQ08752 370 aaKnown RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ZNF844Q08AG5 666 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PPIL2Q13356 520 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 BLMHQ13867 455 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PTPROQ16827 1216 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKRD20A2Q5SQ80 823 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKRD20A1Q5TYW2 823 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKRD20A3Q5VUR7 823 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 RUFY4Q6ZNE9 571 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 TUBA1AQ71U36 451 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ANO5Q75V66 913 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 NLRX1Q86UT6 975 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 P3H4Q92791 437 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 LRRC45Q96CN5 670 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 MAML3Q96JK9 1138 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 EDEM3Q9BZQ6 932 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 GANQ9H2C0 597 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PIDD1Q9HB75 910 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 GLTPD2A6NH11 291 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 RAD51CO43502 376 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 TNFRSF8P28908 595 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ICAM3P32942 547 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PCK1P35558 622 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 EIF4A3P38919 411 aaKnown RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ALDH5A1P51649 535 aaPredicted RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 KCNH2Q12809 1159 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 SEPT7Q16181 437 aaKnown RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 MUM1Q2TAK8 710 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ODR4Q5SWX8 454 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PDXDC1Q6P996 788 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 FAM178BQ8IXR5 827 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 SLC35C1Q96A29 364 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 C1orf74Q96LT6 269 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 TLR10Q9BXR5 811 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 SPATC1LQ9H0A9 340 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ASCC2Q9H1I8 757 aaPredicted RBP8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PREBQ9HCU5 417 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ANKEF1Q9NU02 776 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 ARHGAP20Q9P2F6 1191 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PCSK1NQ9UHG2 260 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 AGAP1Q9UPQ3 857 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 AGTPBP1Q9UPW5 1226 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 PFASO15067 1338 aa8.47□□□□□ -1.05
PDLIM5-221ENST00000542407 LRRD1A4D1F6 860 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 LRRC53A6NM62 1247 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 CLIC2O15247 247 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 HOXA2O43364 376 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 PLS3P13797 630 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 IDO1P14902 403 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 POLE2P56282 527 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 DYNC1I2Q13409 638 aaKnown RBP8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 PABPC1LQ4VXU2 614 aaKnown RBP8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 HGSNATQ68CP4 663 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 PLA2G4FQ68DD2 849 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 GPAT2Q6NUI2 795 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 ABHD15Q6UXT9 468 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 GADL1Q6ZQY3 521 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 C11orf74Q86VG3 221 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 TRIM50Q86XT4 487 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 FRS2Q8WU20 508 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 ATP6V0A1Q93050 837 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 SPATA17Q96L03 361 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 FGD4Q96M96 766 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 SH2D3AQ9BRG2 576 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 ST6GALNAC4Q9H4F1 302 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 TXNRD2Q9NNW7 524 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 AGPAT3Q9NRZ7 376 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 ABCF3Q9NUQ8 709 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 SAMD15Q9P1V8 674 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 CEP72Q9P209 647 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 SALL4Q9UJQ4 1053 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 PCDHA10Q9Y5I2 948 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 IGSF9BQ9UPX0 1349 aa8.46□□□□□ -1.05
PDLIM5-221ENST00000542407 GOLGA6L10A0A0M3HER8 536 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TLDC2A0PJX2 215 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SOWAHBA6NEL2 793 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 SRRM3A6NNA2 597 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 IGF2BP3O00425 579 aaKnown RBP eCLIP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MGEA5O60502 916 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TLR2O60603 784 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LCA5LO95447 670 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 PRLRP16471 622 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ATP2A2P16615 1042 aaKnown RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 OSBPP22059 807 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 IFNAR2P48551 515 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 NPEPPSP55786 919 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 GPR162Q16538 588 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 ASTE1Q2TB18 679 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 LDLRAD1Q5T700 205 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 NUGGCQ68CJ6 796 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MREGQ8N565 214 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TEKT4Q8WW24 435 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 TIPINQ9BVW5 301 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 MMRN2Q9H8L6 949 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 JPH1Q9HDC5 661 aaPredicted RBP8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 PLCB1Q9NQ66 1216 aa8.46□□□□□ -1.06
PDLIM5-221ENST00000542407 PDLIM7Q9NR12 457 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms