RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 PRPF31Q8WWY3 499 aaKnown RBP13.29□□□□□ -0.28
RNF4-222ENST00000541204 SLCO2A1Q92959 643 aa13.29□□□□□ -0.28
RNF4-222ENST00000541204 TACO1Q9BSH4 297 aaKnown RBP13.29□□□□□ -0.28
RNF4-222ENST00000541204 PLVAPQ9BX97 442 aa13.29□□□□□ -0.28
RNF4-222ENST00000541204 PMM2O15305 246 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 ATG7O95352 703 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 TTC4O95801 387 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 CFHP08603 1231 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 IVDP26440 423 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 ICAM3P32942 547 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 IREB2P48200 963 aaKnown RBP13.28□□□□□ -0.28
RNF4-222ENST00000541204 RTP1P59025 263 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 CAPSQ13938 189 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 ZKSCAN8Q15776 578 aaPredicted RBP13.28□□□□□ -0.28
RNF4-222ENST00000541204 WDR44Q5JSH3 913 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 CRELD2Q6UXH1 353 aaPredicted RBP13.28□□□□□ -0.28
RNF4-222ENST00000541204 CYP4X1Q8N118 509 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 TRAPPC12Q8WVT3 735 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 COPS5Q92905 334 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 FAM118BQ9BPY3 351 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 THAP12O43422 761 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 TNFSF9P41273 254 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 NCALDP61601 193 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 FBXO16Q8IX29 292 aaPredicted RBP13.28□□□□□ -0.28
RNF4-222ENST00000541204 OR5B17Q8NGF7 314 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 HEMGNQ9BXL5 484 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 ECT2Q9H8V3 914 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 R3HDM2Q9Y2K5 976 aaKnown RBP13.28□□□□□ -0.28
RNF4-222ENST00000541204 UMODL1Q5DID0 1318 aa13.28□□□□□ -0.28
RNF4-222ENST00000541204 NOP56O00567 594 aaKnown RBP13.27□□□□□ -0.28
RNF4-222ENST00000541204 RPSAP08865 295 aaKnown RBP13.27□□□□□ -0.28
RNF4-222ENST00000541204 BRAFP15056 766 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 SCP2P22307 547 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 ARL2P36404 184 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 ADCY8P40145 1251 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 NAMPTP43490 491 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 OSTNP61366 133 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 CLEC16AQ2KHT3 1053 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 ACCSLQ4AC99 568 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 PPP1R16BQ96T49 567 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 NRBP2Q9NSY0 501 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 MROH7Q68CQ1 1323 aa13.27□□□□□ -0.28
RNF4-222ENST00000541204 CFAP73A6NFT4 308 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 HGSO14964 777 aaPredicted RBP13.27□□□□□ -0.29
RNF4-222ENST00000541204 SUN1O94901 812 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 VNN1O95497 513 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 CETPP11597 493 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 ATF2P15336 505 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 ATP5DP30049 168 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 PTK6Q13882 451 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 TMEM270Q6UE05 265 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 DHX37Q8IY37 1157 aaKnown RBP13.27□□□□□ -0.29
RNF4-222ENST00000541204 DCLK3Q9C098 648 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 APOBEC3GQ9HC16 384 aaKnown RBP13.27□□□□□ -0.29
RNF4-222ENST00000541204 NINJ2Q9NZG7 142 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 ANAPC5Q9UJX4 755 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 L3MBTL1Q9Y468 752 aa13.27□□□□□ -0.29
RNF4-222ENST00000541204 H0YCG3 227 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 O00370 1275 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 CNMDO75829 334 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 ECM2O94769 699 aaPredicted RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 NQO1P15559 274 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 RRM1P23921 792 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 GTF2H1P32780 548 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 PSMD6Q15008 389 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 ZACNQ401N2 412 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 KIF2BQ8N4N8 673 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 CKAP2Q8WWK9 683 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 SEPT1Q8WYJ6 367 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 PNMA3Q9UL41 463 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 MYH9P35579 1960 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 C4BPAP04003 597 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 GALNTL6Q49A17 601 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 SPATA21Q7Z572 469 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 PRUNE1Q86TP1 453 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 RNF149Q8NC42 400 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 FBXO41Q8TF61 875 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 STAMBPL1Q96FJ0 436 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 TRAIPQ9BWF2 469 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 NIFKQ9BYG3 293 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 PCDHB4Q9Y5E5 795 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 A0A0G2JLL6 359 aaPredicted RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 IGF2BP3O00425 579 aaKnown RBP eCLIP13.26□□□□□ -0.29
RNF4-222ENST00000541204 CSDE1O75534 798 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 GAS8O95995 478 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 UNGP13051 313 aaPredicted RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 GCNT1Q02742 428 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 MKRN3Q13064 507 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 ZNF394Q53GI3 561 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 GJC2Q5T442 439 aaPredicted RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 FAM160B1Q5W0V3 765 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 METTL7BQ6UX53 244 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 C15orf39Q6ZRI6 1047 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 PRRT2Q7Z6L0 340 aaPredicted RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 SRRM1Q8IYB3 904 aaKnown RBP13.26□□□□□ -0.29
RNF4-222ENST00000541204 MCOLN2Q8IZK6 566 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 FITM2Q8N6M3 262 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 OPTNQ96CV9 577 aa13.26□□□□□ -0.29
RNF4-222ENST00000541204 CDCA5Q96FF9 252 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms