RNA–Protein interactions for RNA: ENST00000539559.6

TMEM260-203, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,680 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-203ENST00000539559 NPHS2Q9NP85 383 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 DCTN4Q9UJW0 460 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 TMX2Q9Y320 296 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 STARD13Q9Y3M8 1113 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 SKIV2L2P42285 1042 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 YARSP54577 528 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 NCKAP1LP55160 1127 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 SESN3P58005 492 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 MRPS9P82933 396 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 CENPCQ03188 943 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 GPS1Q13098 491 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 SPARCL1Q14515 664 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 TKFCQ3LXA3 575 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 SCARA3Q6AZY7 606 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 ZBED8Q8IZ13 594 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 ZCCHC9Q8N567 271 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 LRRC8CQ8TDW0 803 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 MAIP1Q8WWC4 291 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 GRAMD1AQ96CP6 724 aa21.47■■□□□ 1.03
TMEM260-203ENST00000539559 KLF6Q99612 283 aaPredicted RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 MAK16Q9BXY0 300 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 AGO4Q9HCK5 861 aaKnown RBP21.47■■□□□ 1.03
TMEM260-203ENST00000539559 GOLGA8RI6L899 631 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 MAPK13O15264 365 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 MAPTP10636 758 aaKnown RBP21.46■■□□□ 1.03
TMEM260-203ENST00000539559 ARSEP51690 589 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 CYP24A1Q07973 514 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 CCDC15Q0P6D6 951 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 BLMHQ13867 455 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 JDP2Q8WYK2 163 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 CCPG1Q9ULG6 757 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 SYNPO2Q9UMS6 1093 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 EDF1O60869 148 aaKnown RBP21.46■■□□□ 1.03
TMEM260-203ENST00000539559 TPBGLP0DKB5 382 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 MYCLP12524 364 aaPredicted RBP21.46■■□□□ 1.03
TMEM260-203ENST00000539559 DGKZQ13574 1117 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 RFWD3Q6PCD5 774 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 OTOAQ7RTW8 1153 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 C10orf82Q8WW14 230 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 UBN1Q9NPG3 1134 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 SCAF8Q9UPN6 1271 aaKnown RBP21.46■■□□□ 1.03
TMEM260-203ENST00000539559 CNTNAP1P78357 1384 aa21.46■■□□□ 1.03
TMEM260-203ENST00000539559 IFNB1P01574 187 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 CALB2P22676 271 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 TUBP50607 506 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 RPL7AP62424 266 aaKnown RBP21.45■■□□□ 1.02
TMEM260-203ENST00000539559 PLEKHG4Q58EX7 1191 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 MON1BQ7L1V2 547 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 RHOT1Q8IXI2 618 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 SMC6Q96SB8 1091 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 DENND2DQ9H6A0 471 aaPredicted RBP21.45■■□□□ 1.02
TMEM260-203ENST00000539559 LINGO3P0C6S8 592 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 SLC1A1P43005 524 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 MTMR1Q13613 665 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 CDCA2Q69YH5 1023 aaPredicted RBP21.45■■□□□ 1.02
TMEM260-203ENST00000539559 TXNRD3NBQ6F5E7 133 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 LVRNQ6Q4G3 990 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 CFAP57Q96MR6 1250 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 KMT5AQ9NQR1 393 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 C1orf112Q9NSG2 853 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 CYP39A1Q9NYL5 469 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 TELO2Q9Y4R8 837 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 ACTL7BQ9Y614 415 aa21.45■■□□□ 1.02
TMEM260-203ENST00000539559 PMM2O15305 246 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 TLR3O15455 904 aaKnown RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 MAMLD1Q13495 774 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 MAPK6Q16659 721 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 CIAPIN1Q6FI81 312 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 MFSD7Q6UXD7 560 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 MTDHQ86UE4 582 aaKnown RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 STK32AQ8WU08 396 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 CHURC1Q8WUH1 139 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 SAE1Q9UBE0 346 aaPredicted RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 PPP1R1BQ9UD71 204 aaPredicted RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 HNRNPDLO14979 420 aaKnown RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 CCNE2O96020 404 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 PCK1P35558 622 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 PDK4Q16654 411 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 HHATQ5VTY9 493 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 FAM83AQ86UY5 434 aa21.44■■□□□ 1.02
TMEM260-203ENST00000539559 AVENQ9NQS1 362 aaPredicted RBP21.44■■□□□ 1.02
TMEM260-203ENST00000539559 MAP3K13O43283 966 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 KRT4P19013 534 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 ADRA1DP25100 572 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 SP4Q02446 784 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 NFX1Q12986 1120 aaKnown RBP21.43■■□□□ 1.02
TMEM260-203ENST00000539559 DMP1Q13316 513 aaPredicted RBP21.43■■□□□ 1.02
TMEM260-203ENST00000539559 PARP6Q2NL67 630 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 ANO7Q6IWH7 933 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 MAP4K3Q8IVH8 894 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 BICD1Q96G01 975 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 TMEM121Q9BTD3 319 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 DNALI1O14645 258 aaPredicted RBP21.43■■□□□ 1.02
TMEM260-203ENST00000539559 LIASO43766 372 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 GRIK3Q13003 919 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 PDIA2Q13087 525 aaKnown RBP21.43■■□□□ 1.02
TMEM260-203ENST00000539559 TMEM270Q6UE05 265 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 AGGF1Q8N302 714 aaeCLIP21.43■■□□□ 1.02
TMEM260-203ENST00000539559 RFWD2Q8NHY2 731 aa21.43■■□□□ 1.02
TMEM260-203ENST00000539559 MFSD14AQ96MC6 490 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms