RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RFWD3Q6PCD5 774 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SLC30A9Q6PML9 568 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ZC3H18Q86VM9 953 aaKnown RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 DCLRE1BQ9H816 532 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 MRPL47Q9HD33 250 aaKnown RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 AVENQ9NQS1 362 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 PSMC3IPQ9P2W1 217 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-237ENST00000539504 PCDHB2Q9Y5E7 798 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 A6NHS1 94 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 E7ENQ6 273 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 RCN2Q14257 317 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 AOC3Q16853 763 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SPOPLQ6IQ16 392 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 TMEM270Q6UE05 265 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ASAP3Q8TDY4 903 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 TEKT4Q8WW24 435 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 ANKFY1Q9P2R3 1169 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 HEY2Q9UBP5 337 aa11.89□□□□□ -0.51
SYNE1-237ENST00000539504 SBF2Q86WG5 1849 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 TCP10L2B9ZVM9 353 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 PRPF4O43172 522 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 PSTPIP1O43586 416 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 MAPTP10636 758 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 GNAT1P11488 350 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 SP4Q02446 784 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 RBBP5Q15291 538 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 KHDC1Q4VXA5 237 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 PPFIBP2Q8ND30 876 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 DENND1AQ8TEH3 1009 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 PYROXD1Q8WU10 500 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 MAK16Q9BXY0 300 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 FOXP3Q9BZS1 431 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 CCPG1Q9ULG6 757 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 LMNAP02545 664 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 UNGP13051 313 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 BPIFB4P59827 614 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 KLF1Q13351 362 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 DCUN1D2Q6PH85 259 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 IL31RAQ8NI17 732 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 TRIM55Q9BYV6 548 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 CPSF2Q9P2I0 782 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 MAGEB2O15479 319 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 CCDC22O60826 627 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 TJP3O95049 919 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 SSTR1P30872 391 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 RFC5P40937 340 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 NPTX2P47972 431 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 TUBP50607 506 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 MAPK6Q16659 721 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 SLC45A4Q5BKX6 768 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 CCDC62Q6P9F0 684 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 MFSD7Q6UXD7 560 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 DSTYKQ6XUX3 929 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 ANKS1BQ7Z6G8 1248 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 CLNKQ7Z7G1 428 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 PDCD7Q8N8D1 485 aaKnown RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 RBBP8NLQ8NC74 664 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-237ENST00000539504 EXD1Q8NHP7 514 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 RFWD2Q8NHY2 731 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 AGBL1Q96MI9 1066 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 TMEM121Q9BTD3 319 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 USP20Q9Y2K6 914 aa11.88□□□□□ -0.51
SYNE1-237ENST00000539504 COL16A1Q07092 1604 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 COL5A3P25940 1745 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 LIASO43766 372 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 CFHP08603 1231 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 EIF2AK2P19525 551 aaKnown RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 KLRC2P26717 231 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 GCAP28676 217 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 ARFIP2P53365 341 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 POLE2P56282 527 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 CYP24A1Q07973 514 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 EFTUD2Q15029 972 aaKnown RBP eCLIP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 BBS9Q3SYG4 887 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 SNX30Q5VWJ9 437 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 PALM2Q8IXS6 379 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 SYT15Q9BQS2 421 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 C10orf88Q9H8K7 445 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 NMRK1Q9NWW6 199 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 IKBKGQ9Y6K9 419 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 MYPNQ86TC9 1320 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 CAPN9O14815 690 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 KRT36O76013 467 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 ESRRAP11474 423 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 SKIP12755 728 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 GNA15P30679 374 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 VHLP40337 213 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 MTMR1Q13613 665 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 TFDP1Q14186 410 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 KPNB1Q14974 876 aaKnown RBP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 HIF1AQ16665 826 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 UGCGQ16739 394 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
SYNE1-237ENST00000539504 KATNAL2Q8IYT4 538 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 TTC17Q96AE7 1141 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 IDI2Q9BXS1 227 aa11.87□□□□□ -0.51
SYNE1-237ENST00000539504 PAPOLBQ9NRJ5 636 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms