RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 FGFR2P21802 821 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 MZF1P28698 734 aaPredicted RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 ALDH1B1P30837 517 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 RBM5P52756 815 aaKnown RBP eCLIP7.12□□□□□ -1.27
USP28-207ENST00000538475 PLTPP55058 493 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 ZC3H6P61129 1189 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 POLR2FP61218 127 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 IFI35P80217 286 aaPredicted RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 CDK18Q07002 472 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 CALCOCO2Q13137 446 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 MOGSQ13724 837 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 HNRNPDQ14103 355 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 GIT2Q14161 759 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 RCN2Q14257 317 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 KRT72Q14CN4 511 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 TMEM266Q2M3C6 531 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 MAP3K21Q5TCX8 1036 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 C6orf163Q5TEZ5 329 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 SNX30Q5VWJ9 437 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 AAGABQ6PD74 315 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 VSTM1Q6UX27 236 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 LRRC74BQ6ZQY2 392 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 LONP2Q86WA8 852 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 ECHDC2Q86YB7 292 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 TDRPQ86YL5 185 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 TRIM42Q8IWZ5 723 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 SPATA5Q8NB90 893 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 STMN2Q93045 179 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 SLC7A6OSQ96CW6 309 aaPredicted RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 TTC25Q96NG3 672 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 NAP1L4Q99733 375 aaKnown RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 AP1M1Q9BXS5 423 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 TANGO6Q9C0B7 1094 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 C17orf75Q9HAS0 396 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 PCDH18Q9HCL0 1135 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 POLD4Q9HCU8 107 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 GALNT8Q9NY28 637 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 PLK2Q9NYY3 685 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 GRHL1Q9NZI5 618 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 THEGQ9P2T0 379 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 NKX1-2Q9UD57 310 aaPredicted RBP7.12□□□□□ -1.27
USP28-207ENST00000538475 ADAMTS1Q9UHI8 967 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 DENND2AQ9ULE3 1009 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 SLC4A4Q9Y6R1 1079 aa7.12□□□□□ -1.27
USP28-207ENST00000538475 MYH9P35579 1960 aaKnown RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 ESYT2A0FGR8 921 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 CCDC162PA2VCL2 907 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 FAM47DPA6NHR8 397 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 A8MUI8 341 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MAFGO15525 162 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MAGEC1O60732 1142 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 DNAJC6O75061 913 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 ZBED4O75132 1171 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 FKBP6O75344 327 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MTA2O94776 668 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PSMG1O95456 288 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 TTC4O95801 387 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PDGFAP04085 211 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 SHBGP04278 402 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PDHA1P08559 390 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 BRAFP15056 766 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 GNA11P29992 359 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 RAP1GDS1P52306 607 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PHEXP78562 749 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 CDR2Q01850 454 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PLCB3Q01970 1234 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MCL1Q07820 350 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 SPARCL1Q14515 664 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 GRIK5Q16478 980 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 CNPY1Q3B7I2 92 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 RNF220Q5VTB9 566 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 FYB2Q5VWT5 728 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 LDHAL6AQ6ZMR3 332 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 ACAD11Q709F0 780 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MARK2Q7KZI7 788 aaKnown RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 DGKHQ86XP1 1220 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 CROCCP3Q8IVE0 287 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 KIF2BQ8N4N8 673 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 DTWD1Q8N5C7 304 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 ZNF513Q8N8E2 541 aaPredicted RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 SMYD1Q8NB12 490 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 SLC30A5Q8TAD4 765 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 FBXO25Q8TCJ0 367 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 GRK7Q8WTQ7 553 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 LARP4BQ92615 738 aaKnown RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 HPS3Q969F9 1004 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 TEKT1Q969V4 418 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 LENG1Q96BZ8 264 aaPredicted RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 BTBD10Q9BSF8 475 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 DDX23Q9BUQ8 820 aaKnown RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 ANKRD2Q9GZV1 360 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 WNT8AQ9H1J5 351 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 MYLK2Q9H1R3 596 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 SEMA4AQ9H3S1 761 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 DENND2DQ9H6A0 471 aaPredicted RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 PIDD1Q9HB75 910 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 FETUBQ9UGM5 382 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 ARMCX3Q9UH62 379 aaPredicted RBP7.11□□□□□ -1.27
USP28-207ENST00000538475 USP21Q9UK80 565 aa7.11□□□□□ -1.27
USP28-207ENST00000538475 PAIP2BQ9ULR5 123 aaKnown RBP7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms