RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GOLPH3LQ9H4A5 285 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 INSL5Q9Y5Q6 135 aa15.98■□□□□ 0.15
USP28-204ENST00000537642 ZDBF2Q9HCK1 2354 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 ZNF233A6NK53 670 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 CYB561D2O14569 222 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 CLIC2O15247 247 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 LRG1P02750 347 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 ITGB3P05106 788 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 LAMP2P13473 410 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 POLR2BP30876 1174 aaKnown RBP15.97■□□□□ 0.15
USP28-204ENST00000537642 SV2CQ496J9 727 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 KMT5BQ4FZB7 885 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 PABPC1LQ4VXU2 614 aaKnown RBP15.97■□□□□ 0.15
USP28-204ENST00000537642 LMBRD2Q68DH5 695 aaPredicted RBP15.97■□□□□ 0.15
USP28-204ENST00000537642 KIAA0895Q8NCT3 520 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 ITFG1Q8TB96 612 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 TMEM209Q96SK2 561 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 IGSF9Q9P2J2 1179 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 MAFFQ9ULX9 164 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 AGAP1Q9UPQ3 857 aa15.97■□□□□ 0.15
USP28-204ENST00000537642 PTPRJQ12913 1337 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 KPNA7A9QM74 516 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 MYL1P05976 194 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 RHOP08100 348 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 PRR29P0C7W0 189 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 CYP2J2P51589 502 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 SNRPFP62306 86 aaKnown RBP15.96■□□□□ 0.15
USP28-204ENST00000537642 NUCB2P80303 420 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 STK4Q13043 487 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 GPR17Q13304 367 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 TDGQ13569 410 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 MYBPC2Q14324 1141 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 KNOP1Q1ED39 458 aaKnown RBP15.96■□□□□ 0.15
USP28-204ENST00000537642 WSCD1Q658N2 575 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 HS2ST1Q7LGA3 356 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 OR10T2Q8NGX3 314 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 FGF13Q92913 245 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 PBXIP1Q96AQ6 731 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 ZNF560Q96MR9 790 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 PGLYRP2Q96PD5 576 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 RTP3Q9BQQ7 232 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 MTMR12Q9C0I1 747 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 CRISPLD1Q9H336 500 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 KIAA1586Q9HCI6 787 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 EXOC1Q9NV70 894 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 INTS13Q9NVM9 706 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 SIX4Q9UIU6 781 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 ITGA11Q9UKX5 1188 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 DSEQ9UL01 958 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 CDH7Q9ULB5 785 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 HCN4Q9Y3Q4 1203 aa15.96■□□□□ 0.15
USP28-204ENST00000537642 ZFP37Q9Y6Q3 630 aaPredicted RBP15.96■□□□□ 0.15
USP28-204ENST00000537642 ANHXE9PGG2 379 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 PDGFBP01127 241 aaPredicted RBP15.95■□□□□ 0.14
USP28-204ENST00000537642 TMEM191BP0C7N4 346 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 PTPN2P17706 415 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 PNPLA4P41247 253 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 TWF1Q12792 350 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 PSMD2Q13200 908 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 HTR4Q13639 388 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 SURF1Q15526 300 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 SNRNP35Q16560 246 aaKnown RBP15.95■□□□□ 0.14
USP28-204ENST00000537642 SLC5A9Q2M3M2 681 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 METTL23Q86XA0 190 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 C12orf56Q8IXR9 622 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 CSGALNACT2Q8N6G5 542 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 LRRC52Q8N7C0 313 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 RDH13Q8NBN7 331 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 ST13P5Q8NFI4 369 aaPredicted RBP15.95■□□□□ 0.14
USP28-204ENST00000537642 OR5B17Q8NGF7 314 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 MFSD14AQ96MC6 490 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 AVENQ9NQS1 362 aaPredicted RBP15.95■□□□□ 0.14
USP28-204ENST00000537642 CGNQ9P2M7 1197 aaKnown RBP15.95■□□□□ 0.14
USP28-204ENST00000537642 DUSP12Q9UNI6 340 aa15.95■□□□□ 0.14
USP28-204ENST00000537642 MTMR11A4FU01 709 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 NARSO43776 548 aaKnown RBP15.94■□□□□ 0.14
USP28-204ENST00000537642 ZNF202O95125 648 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 RPN1P04843 607 aaKnown RBP15.94■□□□□ 0.14
USP28-204ENST00000537642 KRT19P08727 400 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 RBP5P82980 135 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 CYP24A1Q07973 514 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 BFSP1Q12934 665 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 DUSP4Q13115 394 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 CENPPQ6IPU0 288 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 POTEHQ6S545 545 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 KRBA2Q6ZNG9 492 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 NPAS3Q8IXF0 933 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 SLC44A3Q8N4M1 653 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 FBXL6Q8N531 539 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 XXYLT1Q8NBI6 393 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 ATAD1Q8NBU5 361 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 ING5Q8WYH8 240 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 NXPE3Q969Y0 559 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 ANKRD36BP1Q96IX9 119 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 CORO1BQ9BR76 489 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 ZCWPW1Q9H0M4 648 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 CEP72Q9P209 647 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 MRPS23Q9Y3D9 190 aaKnown RBP15.94■□□□□ 0.14
USP28-204ENST00000537642 YIPF1Q9Y548 306 aa15.94■□□□□ 0.14
USP28-204ENST00000537642 KMT2EQ8IZD2 1858 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms