RNA–Protein interactions for RNA: ENST00000536274.5

MCF2-210, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,461 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-210ENST00000536274 MIIPQ5JXC2 388 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 WDR45BQ5MNZ6 344 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 WASHC2DQ5SRD0 308 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ANKRD40Q6AI12 368 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SNRNP48Q6IEG0 339 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 XKR5Q6UX68 686 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 USP43Q70EL4 1123 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZNF804AQ7Z570 1209 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 AMIGO2Q86SJ2 522 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GPC2Q8N158 579 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 VPS52Q8N1B4 723 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 DCLK2Q8N568 766 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 CFAP61Q8NHU2 1237 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GSDMBQ8TAX9 411 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 RSPH1Q8WYR4 309 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ATP2A3Q93084 1043 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PMEPA1Q969W9 287 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MCUR1Q96AQ8 359 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 DCPSQ96C86 337 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 C18orf8Q96DM3 657 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZNF496Q96IT1 587 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZNF512Q96ME7 567 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 ACAP3Q96P50 834 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 POLR3CQ9BUI4 534 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 MRPL1Q9BYD6 325 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 B3GNT4Q9C0J1 378 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PAIP1Q9H074 479 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 MARCH7Q9H992 704 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CDHR5Q9HBB8 845 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MAN1C1Q9NR34 630 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 COQ3Q9NZJ6 369 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZFP69BQ9UJL9 534 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PHTF1Q9UMS5 762 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CARD8Q9Y2G2 431 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 TBC1D30Q9Y2I9 924 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PFASO15067 1338 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 A0A0G2JND7 137 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 LOC105371267A0A1B0GV96 52 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SSC5DA1L4H1 1573 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GOLGA8AA7E2F4 631 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 E9PBE3 544 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PSMD11O00231 422 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 XPO1O14980 1071 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 TLR2O60603 784 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 COL4A1P02462 1669 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 FGGP02679 453 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CYP1A2P05177 515 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 OCM2P0CE71 109 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 OCMP0CE72 109 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 UBL4AP11441 157 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PABPC1P11940 636 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 KRT13P13646 458 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PRKACBP22694 351 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CIITAP33076 1130 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 EIF3BP55884 814 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 WDR4P57081 412 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 MAP3K10Q02779 954 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MTMR3Q13615 1198 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CUL1Q13616 776 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 TRIP13Q15645 432 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 IL17AQ16552 155 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 FAM214AQ32MH5 1076 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CRY2Q49AN0 593 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 UMODL1Q5DID0 1318 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 RILPL1Q5EBL4 403 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CMPK2Q5EBM0 449 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZDHHC24Q6UX98 284 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 USP37Q86T82 979 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CLIP4Q8N3C7 705 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 BBS5Q8N3I7 341 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 NATD1Q8N6N6 113 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SYT2Q8N9I0 419 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 CXorf38Q8TB03 319 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 LRRC15Q8TF66 581 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GRK7Q8WTQ7 553 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SCFD2Q8WU76 684 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 CKAP2Q8WWK9 683 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SEC14L1Q92503 715 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 DGCR14Q96DF8 476 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 CNBD2Q96M20 576 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PRICKLE1Q96MT3 831 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 PRPF18Q99633 342 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 RTFDC1Q9BY42 306 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 EIF2AQ9BY44 585 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 SHCBP1LQ9BZQ2 653 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 VRTNQ9H8Y1 702 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ZNF287Q9HBT7 754 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 PCDH12Q9NPG4 1184 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ACP6Q9NPH0 428 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 GINM1Q9NU53 330 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SLC38A7Q9NVC3 462 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MTPAPQ9NVV4 582 aaKnown RBP eCLIP3.93□□□□□ -1.78
MCF2-210ENST00000536274 PTTG2Q9NZH5 202 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MAGEC2Q9UBF1 373 aaPredicted RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 TMEM59LQ9UK28 342 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 SRPRBQ9Y5M8 271 aaKnown RBP3.93□□□□□ -1.78
MCF2-210ENST00000536274 MYH3P11055 1940 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 ABCB11O95342 1321 aa3.93□□□□□ -1.78
MCF2-210ENST00000536274 MROH7Q68CQ1 1323 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms