RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	DUSP26	Q9BV47	211 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	TLR10	Q9BXR5	811 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	KIAA1586	Q9HCI6	787 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	KCTD5	Q9NXV2	234 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	DDX56	Q9NY93	547 aa	Known RBP	3.58	□□□□□ -1.84
CD44-238	ENST00000534296	HSFX1	Q9UBD0	423 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	ABCF2	Q9UG63	623 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	ZDHHC8	Q9ULC8	765 aa		3.58	□□□□□ -1.84
CD44-238	ENST00000534296	PNMA8B	Q9ULN7	279 aa	Predicted RBP	3.58	□□□□□ -1.84
CD44-238	ENST00000534296	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	3.58	□□□□□ -1.84
CD44-238	ENST00000534296	F2RL2	O00254	374 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	YY2	O15391	372 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	TRIAP1	O43715	76 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	S100B	P04271	92 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	POU2F2	P09086	479 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	SBK3	P0C264	359 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	HSPA6	P17066	643 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	ITGAL	P20701	1170 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	SLC6A4	P31645	630 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	ZNF135	P52742	658 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	HK3	P52790	923 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	NANOS3	P60323	173 aa	Known RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	PSMC1	P62191	440 aa	Known RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	ITIH3	Q06033	890 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	SNAPC2	Q13487	334 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	DYRK1A	Q13627	763 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	TTF1	Q15361	905 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	PCSK4	Q6UW60	755 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	OLFML1	Q6UWY5	402 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	MICALCL	Q6ZW33	695 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	GRASP	Q7Z6J2	395 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	LNX2	Q8N448	690 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	CAMKK1	Q8N5S9	505 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	TMIE	Q8NEW7	156 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	TNPO1	Q92973	898 aa	Known RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	MVB12A	Q96EY5	273 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	FBXL20	Q96IG2	436 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	PGBD1	Q96JS3	809 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	SARS2	Q9NP81	518 aa	Known RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296	NMRK2	Q9NPI5	230 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	ZNF180	Q9UJW8	692 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	TLK1	Q9UKI8	766 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	PCDHA3	Q9Y5H8	950 aa		3.57	□□□□□ -1.84
CD44-238	ENST00000534296	EPN1	Q9Y6I3	576 aa	Predicted RBP	3.57	□□□□□ -1.84
CD44-238	ENST00000534296		A0A0B4J269	797 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296		H3BUI4	141 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	SRGN	P10124	158 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	PROZ	P22891	400 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	PRDX5	P30044	214 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	FOLR3	P41439	243 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	NPTX2	P47972	431 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	KCNJ5	P48544	419 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	ELL	P55199	621 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-238	ENST00000534296	NXPH1	P58417	271 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	DSC2	Q02487	901 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	TUBB3	Q13509	450 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	HABP2	Q14520	560 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-238	ENST00000534296	KIF22	Q14807	665 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	SF3B3	Q15393	1217 aa	Known RBP	3.56	□□□□□ -1.84
CD44-238	ENST00000534296	ODR4	Q5SWX8	454 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	TEDDM1	Q5T9Z0	273 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	CATIP	Q7Z7H3	387 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	GRAMD1C	Q8IYS0	662 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	ADGRG5	Q8IZF4	528 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	PRR18	Q8N4B5	295 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	SH2D3C	Q8N5H7	860 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	TOR1AIP2	Q8NFQ8	470 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	NACC2	Q96BF6	587 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	C1GALT1C1	Q96EU7	318 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	MOGAT1	Q96PD6	335 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	CAMKK2	Q96RR4	588 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	METTL14	Q9HCE5	456 aa	Known RBP	3.56	□□□□□ -1.84
CD44-238	ENST00000534296	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	3.56	□□□□□ -1.84
CD44-238	ENST00000534296	PNPO	Q9NVS9	261 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	TCEAL9	Q9UHQ7	104 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	STXBP5L	Q9Y2K9	1186 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	NR2E3	Q9Y5X4	410 aa		3.56	□□□□□ -1.84
CD44-238	ENST00000534296	COL4A3	Q01955	1670 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SPATA31A3	Q5VYP0	1347 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	LRRC14B	A6NHZ5	514 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	NT5C1B-RDH14	C9J2C7	533 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296		F5H697	171 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	OVOL3	O00110	214 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	KIAA0355	O15063	1070 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	MPPED1	O15442	326 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	TYR	P14679	529 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	ADRA1B	P35368	520 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	MPL	P40238	635 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	NDUFV1	P49821	464 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	MAP2K6	P52564	334 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	SCAP	Q12770	1279 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	FOXI1	Q12951	378 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	ZNF169	Q14929	603 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-238	ENST00000534296	KRTAP15-1	Q3LI76	137 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	CD300E	Q496F6	205 aa	Predicted RBP	3.55	□□□□□ -1.84
CD44-238	ENST00000534296	AMOT	Q4VCS5	1084 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	PRR16	Q569H4	304 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	KAZN	Q674X7	775 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	LAYN	Q6UX15	382 aa		3.55	□□□□□ -1.84
CD44-238	ENST00000534296	ADGRG3	Q86Y34	549 aa		3.55	□□□□□ -1.84

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