RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 SPECC1Q5M775 1068 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 SYDE2Q5VT97 1194 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 CCDC62Q6P9F0 684 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 HS2ST1Q7LGA3 356 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 RTN4RL1Q86UN2 441 aaPredicted RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 AACSQ86V21 672 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 CARFQ8N187 725 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 REXO1Q8N1G1 1221 aaKnown RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 C12orf76Q8N812 135 aaPredicted RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 ATP8B4Q8TF62 1192 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 GIPC2Q8TF65 315 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 STAG1Q8WVM7 1258 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 CLEC4DQ8WXI8 215 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 MKL1Q969V6 931 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 ZBTB10Q96DT7 871 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 SAMD11Q96NU1 681 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 TAAR1Q96RJ0 339 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 C11orf84Q9BUA3 381 aaPredicted RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 PUS7LQ9H0K6 701 aaKnown RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 MFSD1Q9H3U5 465 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 RXFP1Q9HBX9 757 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 IL1RAPL2Q9NP60 686 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 GPR108Q9NPR9 543 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 MTMR4Q9NYA4 1195 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 CCPG1Q9ULG6 757 aa3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 SF3B6Q9Y3B4 125 aaKnown RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 GCN1Q92616 2671 aaKnown RBP3.5□□□□□ -1.85
CHMP4A-208ENST00000534106 OTOGLQ3ZCN5 2332 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SH3D21A4FU49 640 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CYSRT1A8MQ03 144 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 GSG1L2A8MUP6 293 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 HIDE1A8MVS5 230 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 HAS3O00219 553 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 FGF10O15520 208 aaPredicted RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 NARSO43776 548 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 EFCAB14O75071 495 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CHRNA1P02708 482 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 MMP1P03956 469 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 GNAI3P08754 354 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CASTP20810 708 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SLC1A4P43007 532 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CLCN5P51795 746 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 RPS6P62753 249 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 TFAP4Q01664 338 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 TAGLNQ01995 201 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SP2Q02086 613 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 RBL2Q08999 1139 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SLFN5Q08AF3 891 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 TKFCQ3LXA3 575 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ALDH1L2Q3SY69 923 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 FBXW10Q5XX13 1052 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 MCTP2Q6DN12 878 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 RCSD1Q6JBY9 416 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ANKRD54Q6NXT1 300 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SERINC5Q86VE9 423 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SESTD1Q86VW0 696 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CERS3Q8IU89 383 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 DHX37Q8IY37 1157 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CCDC105Q8IYK2 499 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ZNF444Q8N0Y2 327 aaPredicted RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SUMF1Q8NBK3 374 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SSH3Q8TE77 659 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 USP33Q8TEY7 942 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SCFD2Q8WU76 684 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SEPT8Q92599 483 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ZNF689Q96CS4 500 aaPredicted RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 YTHDC1Q96MU7 727 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 PTCHD1Q96NR3 888 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 API5Q9BZZ5 524 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 LMAN2LQ9H0V9 348 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 CPVLQ9H3G5 476 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 BOLA2Q9H3K6 86 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 RNPEPQ9H4A4 650 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 POMKQ9H5K3 350 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 NOL6Q9H6R4 1146 aaKnown RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ERVK-5Q9HDB9 667 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 ATP8A2Q9NTI2 1148 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 SETD4Q9NVD3 440 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 NTMQ9P121 344 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 COL20A1Q9P218 1284 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 NUDT5Q9UKK9 219 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 PLA2G2DQ9UNK4 145 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 HDAC5Q9UQL6 1122 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 EXOC6BQ9Y2D4 811 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 DUSP10Q9Y6W6 482 aa3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 COL4A4P53420 1690 aaPredicted RBP3.49□□□□□ -1.85
CHMP4A-208ENST00000534106 FRMPD2Q68DX3 1309 aaPredicted RBP3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 MAST4O15021 2626 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 C17orf102A2RUQ5 167 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 MEIS3P2A8K0S8 358 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 NKRFO15226 690 aaKnown RBP eCLIP3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 AKAP8O43823 692 aaKnown RBP3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 DGKIO75912 1065 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 PARNO95453 639 aaKnown RBP3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 TTLL1O95922 423 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 GH1P01241 217 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 DCNP07585 359 aaKnown RBP3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 SP9P0CG40 484 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 SMIM10L2AP0DMW4 78 aa3.48□□□□□ -1.85
CHMP4A-208ENST00000534106 SMIM10L2BP0DMW5 78 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms