RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CDH22Q9UJ99 828 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 MAN1B1Q9UKM7 699 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 FRMD4BQ9Y2L6 1034 aa16.21■□□□□ 0.19
CPSF1-208ENST00000532560 TIMM13Q9Y5L4 95 aaPredicted RBP16.21■□□□□ 0.19
CPSF1-208ENST00000532560 DENND4AQ7Z401 1863 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 WDR27A2RRH5 827 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 C19orf67A6NJJ6 358 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 OR6C75A6NL08 312 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 CYB561D2O14569 222 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 RFPL2O75678 378 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 ABLIM3O94929 683 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 KRT19P08727 400 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 POU2F2P09086 479 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 RPL13P26373 211 aaKnown RBP16.2■□□□□ 0.18
CPSF1-208ENST00000532560 CASP4P49662 377 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 CLDN10P78369 228 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 TPGS2Q68CL5 300 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 TRAPPC11Q7Z392 1133 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 PLEKHO2Q8TD55 490 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 PARD3BQ8TEW8 1205 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 GBP4Q96PP9 640 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 GDAP2Q9NXN4 497 aa16.2■□□□□ 0.18
CPSF1-208ENST00000532560 C2orf16Q68DN1 1984 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 CCDC195A0A1B0GUA6 201 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 LRRIQ3A6PVS8 624 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-208ENST00000532560 C8AP07357 584 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 HNRNPA1P09651 372 aaKnown RBP eCLIP16.19■□□□□ 0.18
CPSF1-208ENST00000532560 PPP1R2P41236 205 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 AP3M2P53677 418 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 ENPEPQ07075 957 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 BFSP1Q12934 665 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 MYO1EQ12965 1108 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 UVSSAQ2YD98 709 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 ATAT1Q5SQI0 421 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 CEP135Q66GS9 1140 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 SCARA3Q6AZY7 606 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 CENPPQ6IPU0 288 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 CCDC149Q6ZUS6 474 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 ADSSL1Q8N142 457 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 FEZF2Q8TBJ5 459 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 TMC2Q8TDI7 906 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 ZNF707Q96C28 371 aaPredicted RBP16.19■□□□□ 0.18
CPSF1-208ENST00000532560 POMKQ9H5K3 350 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 MAFFQ9ULX9 164 aa16.19■□□□□ 0.18
CPSF1-208ENST00000532560 R3HCC1Q9Y3T6 440 aaKnown RBP16.19■□□□□ 0.18
CPSF1-208ENST00000532560 AKAP3O75969 853 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 WEE2P0C1S8 567 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 CPB1P15086 417 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 ATF2P15336 505 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 ARPP19P56211 112 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 STIM1Q13586 685 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 MORC3Q14149 939 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 PPM1LQ5SGD2 360 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 WSCD1Q658N2 575 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 INTS8Q75QN2 995 aaKnown RBP16.18■□□□□ 0.18
CPSF1-208ENST00000532560 METTL23Q86XA0 190 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 ZC3H3Q8IXZ2 948 aaKnown RBP16.18■□□□□ 0.18
CPSF1-208ENST00000532560 GJD3Q8N144 294 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 SLC7A14Q8TBB6 771 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 SPATA18Q8TC71 538 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 SMG7Q92540 1137 aaKnown RBP16.18■□□□□ 0.18
CPSF1-208ENST00000532560 ZNF516Q92618 1163 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 TSG101Q99816 390 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 MKNK1Q9BUB5 465 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 PRKD2Q9BZL6 878 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 LMBRD1Q9NUN5 540 aa16.18■□□□□ 0.18
CPSF1-208ENST00000532560 AFF4Q9UHB7 1163 aaKnown RBP16.18■□□□□ 0.18
CPSF1-208ENST00000532560 NCOR1O75376 2440 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 LOC730098B7Z3J9 87 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TNFRSF10AO00220 468 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 PSMA7O14818 248 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 HUS1O60921 280 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 SSTR3P32745 418 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-208ENST00000532560 PSMC2P35998 433 aaKnown RBP16.17■□□□□ 0.18
CPSF1-208ENST00000532560 LRRC63Q05C16 580 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 GPR17Q13304 367 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 ADAM9Q13443 819 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TDRD10Q5VZ19 366 aaKnown RBP16.17■□□□□ 0.18
CPSF1-208ENST00000532560 FAM186BQ8IYM0 893 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TCEAL8Q8IYN2 117 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TMEM86AQ8N2M4 240 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 PDCL2Q8N4E4 241 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TOP6BLQ8N6T0 577 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 TRIML1Q8N9V2 468 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 DHTKD1Q96HY7 919 aaPredicted RBP16.17■□□□□ 0.18
CPSF1-208ENST00000532560 HPDLQ96IR7 371 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 CD320Q9NPF0 282 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 L1RE1Q9UN81 338 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 SNX9Q9Y5X1 595 aa16.17■□□□□ 0.18
CPSF1-208ENST00000532560 IKBKBO14920 756 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 CETN3O15182 167 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 XYLBO75191 536 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 STAU1O95793 577 aaKnown RBP16.16■□□□□ 0.18
CPSF1-208ENST00000532560 BMP6P22004 513 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 CCNE1P24864 410 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 ELF1P32519 619 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 VAMP7P51809 220 aa16.16■□□□□ 0.18
CPSF1-208ENST00000532560 PMS1P54277 932 aaKnown RBP16.16■□□□□ 0.18
CPSF1-208ENST00000532560 MCCD1P59942 119 aaPredicted RBP16.16■□□□□ 0.18
CPSF1-208ENST00000532560 DLG4P78352 724 aa16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms