RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DUSP12Q9UNI6 340 aa22.26■■□□□ 1.15
VPS28-206ENST00000526734 KPNA7A9QM74 516 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 TMEM191BP0C7N4 346 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 HOXD13P35453 343 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 SMARCB1Q12824 385 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 MTSS1LQ765P7 747 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 C12orf56Q8IXR9 622 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 THEM5Q8N1Q8 247 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 TMEM130Q8N3G9 435 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 NOC3LQ8WTT2 800 aaKnown RBP22.25■■□□□ 1.15
VPS28-206ENST00000526734 CCDC47Q96A33 483 aaKnown RBP22.25■■□□□ 1.15
VPS28-206ENST00000526734 ANKRD36BP1Q96IX9 119 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 DNMT3BQ9UBC3 853 aaKnown RBP22.25■■□□□ 1.15
VPS28-206ENST00000526734 R3HCC1Q9Y3T6 440 aaKnown RBP22.25■■□□□ 1.15
VPS28-206ENST00000526734 ANK1P16157 1881 aa22.25■■□□□ 1.15
VPS28-206ENST00000526734 ANHXE9PGG2 379 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 CYB561D2O14569 222 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 ZNF197O14709 1029 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 TGFB1I1O43294 461 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 MICAL2O94851 1124 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 SEC24AO95486 1093 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 CASP1P29466 404 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 NTHL1P78549 312 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 KNOP1Q1ED39 458 aaKnown RBP22.24■■□□□ 1.15
VPS28-206ENST00000526734 IQCEQ6IPM2 695 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 RNF19BQ6ZMZ0 732 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 C1orf127Q8N9H9 656 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 ZSWIM2Q8NEG5 633 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 SPATA18Q8TC71 538 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 PDE11AQ9HCR9 933 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 SLC39A2Q9NP94 309 aa22.24■■□□□ 1.15
VPS28-206ENST00000526734 MRPS23Q9Y3D9 190 aaKnown RBP22.24■■□□□ 1.15
VPS28-206ENST00000526734 KLRC4O43908 158 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 PRPF40AO75400 957 aaKnown RBP22.23■■□□□ 1.15
VPS28-206ENST00000526734 TNNC2P02585 160 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 ITGB3P05106 788 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 RHOP08100 348 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 POLR2BP30876 1174 aaKnown RBP22.23■■□□□ 1.15
VPS28-206ENST00000526734 WNT7BP56706 349 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 RBP5P82980 135 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 HTR4Q13639 388 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 WDR49Q8IV35 697 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 NELFCDQ8IXH7 590 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 GRAMD1CQ8IYS0 662 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 XXYLT1Q8NBI6 393 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 C2orf15Q8WU43 125 aaKnown RBP22.23■■□□□ 1.15
VPS28-206ENST00000526734 FGF13Q92913 245 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 PRRX2Q99811 253 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 INTS13Q9NVM9 706 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 GDE1Q9NZC3 331 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 AGAP1Q9UPQ3 857 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 YIPF1Q9Y548 306 aa22.23■■□□□ 1.15
VPS28-206ENST00000526734 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP22.22■■□□□ 1.15
VPS28-206ENST00000526734 KIF20AO95235 890 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 NDUFA8P51970 172 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 SNRNP35Q16560 246 aaKnown RBP22.22■■□□□ 1.15
VPS28-206ENST00000526734 DUOXA2Q1HG44 320 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 CBWD2Q8IUF1 395 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 TMEM86AQ8N2M4 240 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 FSIP1Q8NA03 581 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 BORCS6Q96GS4 357 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 ZNF512Q96ME7 567 aaPredicted RBP22.22■■□□□ 1.15
VPS28-206ENST00000526734 HCFC1R1Q9NWW0 138 aa22.22■■□□□ 1.15
VPS28-206ENST00000526734 MTMR11A4FU01 709 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 HUS1O60921 280 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 SRFP11831 508 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 NUBP1P53384 320 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 TWF1Q12792 350 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 MYO1EQ12965 1108 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 KMT5BQ4FZB7 885 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 CYP4A22Q5TCH4 519 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 PDZD4Q76G19 769 aaPredicted RBP22.21■■□□□ 1.15
VPS28-206ENST00000526734 NPAS3Q8IXF0 933 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 SLC44A3Q8N4M1 653 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 CSGALNACT2Q8N6G5 542 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 ITFG1Q8TB96 612 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 TMEM174Q8WUU8 243 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 FNBP1Q96RU3 617 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 MTMR12Q9C0I1 747 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 ZCWPW1Q9H0M4 648 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 GDAP2Q9NXN4 497 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 ASB3Q9Y575 518 aa22.21■■□□□ 1.15
VPS28-206ENST00000526734 TULP1O00294 542 aaPredicted RBP22.2■■□□□ 1.14
VPS28-206ENST00000526734 OR4Q2P0C623 313 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 ALDH1A3P47895 512 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 CYP2J2P51589 502 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 EPHB3P54753 998 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 PSMD6Q15008 389 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 WSCD1Q658N2 575 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 CENPPQ6IPU0 288 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 DCP1BQ8IZD4 617 aaKnown RBP22.2■■□□□ 1.14
VPS28-206ENST00000526734 CXorf38Q8TB03 319 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 CHAMP1Q96JM3 812 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 CORO1BQ9BR76 489 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 ASAH2Q9NR71 780 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 WNT16Q9UBV4 365 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 NUMBLQ9Y6R0 609 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 TSC2P49815 1807 aa22.2■■□□□ 1.14
VPS28-206ENST00000526734 DOCK8Q8NF50 2099 aa22.19■■□□□ 1.14
VPS28-206ENST00000526734 RPN1P04843 607 aaKnown RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms